Thermococcus onnurineus NA1

Korea Ocean Research & Development Institute , Macrogen Inc.

Genome Size: 1.8 megabases, GC Content: 51.3%, Released Date: Nov. 6, 2008 #17571

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

complete genome
NC_011529
1.8 MB
1975 CDS

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References

The complete genome sequence of Thermococcus onnurineus NA1 reveals a mixed heterotrophic and carboxydotrophic metabolism
Lee,H.S., Kang,S.G., Bae,S.S., Lim,J.K., Cho,Y., Kim,Y.J., Jeon,J.H., Cha,S.S., Kwon,K.K., Kim,H.T., Park,C.J., Lee,H.W., Kim,S.I., Chun,J., Colwell,R.R., Kim,S.J. and Lee,J.H. J. Bacteriol. 190 (22), 7491-7499 (2008)
PubMed, PubGet, HubMed

Taxonomy

External Links

Thermococcus onnurineus NA1

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Sequences

References

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