Thermococcus sibiricus MM 739

Centre

Genome Size: 1.8 megabases, Released Date: June 29, 2009 #17572

 Completed genome

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region:   bp. upstream of a gene 
Leave blank for no restriction.

Report matches:  in any location within intergenic regions only overlapping genes only  

Allow  1 2 3 4 5 6 7 8 9  mismatched bases 

Sequences

References

• Metabolic versatility and indigenous origin of the archaeon Thermococcus sibiricus, isolated from a siberian oil reservoir, as revealed by genome analysis
  Mardanov,A.V., Ravin,N.V., Svetlitchnyi,V.A., Beletsky,A.V., Miroshnichenko,M.L., Bonch-Osmolovskaya,E.A. and Skryabin,K.G. Appl. Environ. Microbiol. 75 (13), 4580-4588 (2009)
  PubMed, PubGet, HubMed

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