Thermococcus sp. AM4

J. Craig Venter Institute

Genome Size: 2.1 megabases, GC Content: 54.8%, Released Date: Sept. 30, 2008 #15315

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

unfinished sequence, whole genome shotgun sequence
NZ_ABXN01000001
2.8 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABXN01000002
2.5 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABXN01000003
3.8 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABXN01000004
2.0 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABXN01000005
1.6 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABXN01000006
7.8 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABXN01000007
35.8 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABXN01000008
179.1 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABXN01000009
18.4 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABXN01000010
80.6 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABXN01000011
213.9 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABXN01000012
347.0 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABXN01000013
82.1 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABXN01000014
349.2 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABXN01000015
317.5 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABXN01000016
390.6 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABXN01000017
1.0 KB
0 CDS

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Taxonomy

External Links

Thermococcus sp. AM4

Search Genome

Sequences

PubMed Search for Thermococcus sp. AM4

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