Thermomicrobium roseum DSM 5159

J Craig Venter Institute

Genome Size: 2.92 megabases, GC Content: 64.3%, Released Date: Jan. 22, 2009 #17575

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_011959
1.9 MB
1917 CDS

Table view
Circular View
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plasmid unnamed
NC_011961
896.2 KB
937 CDS

Table view
Circular View
Artemis Viewer

References

Complete genome sequence of the aerobic CO-oxidizing thermophile Thermomicrobium roseum
Wu,D., Raymond,J., Wu,M., Chatterji,S., Ren,Q., Graham,J.E., Bryant,D.A., Robb,F., Colman,A., Tallon,L.J., Badger,J.H., Madupu,R., Ward,N.L. and Eisen,J.A. PLoS ONE 4 (1), E4207 (2009)
PubMed, PubGet, HubMed

Taxonomy

External Links

Thermomicrobium roseum DSM 5159

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Sequences

References

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