Thermoplasma volcanium GSS1

National Institute of Advanced Industrial Science and Technology, Japan

Genome Size: 1.58 megabases, GC Content: 39.9%, Released Date: Dec. 20, 2000 #17578

Completed genome

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_002689
1.5 MB
1499 CDS

Table view
Circular View
Artemis Viewer

References

Archaeal adaptation to higher temperatures revealed by genomic sequence of Thermoplasma volcanium
Kawashima,T., Amano,N., Koike,H., Makino,S., Higuchi,S., Kawashima-Ohya,Y., Watanabe,K., Yamazaki,M., Kanehori,K., Kawamoto,T., Nunoshiba,T., Yamamoto,Y., Aramaki,H., Makino,K. and Suzuki,M. Proc. Natl. Acad. Sci. U.S.A. 97 (26), 14257-14262 (2000)
PubMed, PubGet, HubMed

Taxonomy

External Links

Thermoplasma volcanium GSS1

Search Genome

Sequences

References

Related Genomes