Thermus thermophilus HB27

University of Goettingen

Genome Size: 2.13 megabases, GC Content: 69.4%, Released Date: April 6, 2004 #17589

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_005835
1.8 MB
1982 CDS

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plasmid pTT27
NC_005838
227.2 KB
228 CDS

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References

The genome sequence of the extreme thermophile Thermus thermophilus
Henne,A., Bruggemann,H., Raasch,C., Wiezer,A., Hartsch,T., Liesegang,H., Johann,A., Lienard,T., Gohl,O., Martinez-Arias,R., Jacobi,C., Starkuviene,V., Schlenczeck,S., Dencker,S., Huber,R., Klenk,H.P., Kramer,W., Merkl,R., Gottschalk,G. and Fritz,H.J. Nat. Biotechnol. 22 (5), 547-553 (2004)
PubMed, PubGet, HubMed

Taxonomy

External Links

Thermus thermophilus HB27

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Sequences

References

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