Treponema vincentii ATCC 35580

J. Craig Venter Institute

Released Date: Sept. 8, 2009 #18495

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ACYH01000001
1.0 KB
2 CDS

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whole genome shotgun sequence
NZ_ACYH01000002
7.2 KB
10 CDS

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whole genome shotgun sequence
NZ_ACYH01000003
16.9 KB
16 CDS

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whole genome shotgun sequence
NZ_ACYH01000004
295 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACYH01000005
43.5 KB
43 CDS

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whole genome shotgun sequence
NZ_ACYH01000006
380 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACYH01000007
19.6 KB
23 CDS

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whole genome shotgun sequence
NZ_ACYH01000008
412 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACYH01000009
4.6 KB
4 CDS

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whole genome shotgun sequence
NZ_ACYH01000010
6.4 KB
5 CDS

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whole genome shotgun sequence
NZ_ACYH01000011
280.1 KB
249 CDS

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whole genome shotgun sequence
NZ_ACYH01000012
153.4 KB
175 CDS

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whole genome shotgun sequence
NZ_ACYH01000013
57.9 KB
63 CDS

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whole genome shotgun sequence
NZ_ACYH01000014
24.6 KB
31 CDS

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whole genome shotgun sequence
NZ_ACYH01000015
20.5 KB
24 CDS

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whole genome shotgun sequence
NZ_ACYH01000016
992 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACYH01000017
265 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACYH01000018
46.3 KB
40 CDS

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whole genome shotgun sequence
NZ_ACYH01000019
306 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACYH01000020
14.4 KB
16 CDS

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whole genome shotgun sequence
NZ_ACYH01000021
393 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACYH01000022
6.3 KB
5 CDS

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whole genome shotgun sequence
NZ_ACYH01000023
290 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACYH01000024
70.5 KB
87 CDS

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whole genome shotgun sequence
NZ_ACYH01000025
761 bytes
2 CDS

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whole genome shotgun sequence
NZ_ACYH01000026
7.4 KB
10 CDS

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whole genome shotgun sequence
NZ_ACYH01000027
160.6 KB
180 CDS

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whole genome shotgun sequence
NZ_ACYH01000028
567 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACYH01000029
6.4 KB
7 CDS

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whole genome shotgun sequence
NZ_ACYH01000030
23.5 KB
33 CDS

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whole genome shotgun sequence
NZ_ACYH01000031
61.0 KB
60 CDS

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whole genome shotgun sequence
NZ_ACYH01000032
57.1 KB
58 CDS

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whole genome shotgun sequence
NZ_ACYH01000033
46.6 KB
48 CDS

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whole genome shotgun sequence
NZ_ACYH01000034
331 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACYH01000035
6.5 KB
10 CDS

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whole genome shotgun sequence
NZ_ACYH01000036
2.1 KB
1 CDS

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whole genome shotgun sequence
NZ_ACYH01000037
144.5 KB
149 CDS

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whole genome shotgun sequence
NZ_ACYH01000038
40.9 KB
42 CDS

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whole genome shotgun sequence
NZ_ACYH01000039
762 bytes
2 CDS

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whole genome shotgun sequence
NZ_ACYH01000040
51.4 KB
56 CDS

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whole genome shotgun sequence
NZ_ACYH01000041
179.2 KB
179 CDS

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whole genome shotgun sequence
NZ_ACYH01000042
276 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACYH01000043
1.7 KB
3 CDS

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whole genome shotgun sequence
NZ_ACYH01000044
247 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACYH01000045
41.0 KB
21 CDS

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whole genome shotgun sequence
NZ_ACYH01000046
7.3 KB
11 CDS

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whole genome shotgun sequence
NZ_ACYH01000047
66.9 KB
71 CDS

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whole genome shotgun sequence
NZ_ACYH01000048
17.7 KB
15 CDS

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whole genome shotgun sequence
NZ_ACYH01000049
232.4 KB
232 CDS

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whole genome shotgun sequence
NZ_ACYH01000050
12.7 KB
16 CDS

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whole genome shotgun sequence
NZ_ACYH01000051
6.2 KB
7 CDS

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whole genome shotgun sequence
NZ_ACYH01000052
8.6 KB
12 CDS

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whole genome shotgun sequence
NZ_ACYH01000053
651 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACYH01000054
112.3 KB
105 CDS

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whole genome shotgun sequence
NZ_ACYH01000055
323 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACYH01000056
14.9 KB
10 CDS

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whole genome shotgun sequence
NZ_ACYH01000057
550 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACYH01000058
46.6 KB
47 CDS

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whole genome shotgun sequence
NZ_ACYH01000059
35.1 KB
34 CDS

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whole genome shotgun sequence
NZ_ACYH01000060
57.7 KB
56 CDS

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whole genome shotgun sequence
NZ_ACYH01000061
2.5 KB
3 CDS

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whole genome shotgun sequence
NZ_ACYH01000062
218 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACYH01000063
473 bytes
0 CDS

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whole genome shotgun sequence
NZ_ACYH01000064
417 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACYH01000065
464 bytes
0 CDS

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whole genome shotgun sequence
NZ_ACYH01000066
48.9 KB
53 CDS

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whole genome shotgun sequence
NZ_ACYH01000067
1.0 KB
1 CDS

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whole genome shotgun sequence
NZ_ACYH01000068
38.3 KB
44 CDS

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whole genome shotgun sequence
NZ_ACYH01000069
1.8 KB
3 CDS

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whole genome shotgun sequence
NZ_ACYH01000070
361 bytes
0 CDS

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whole genome shotgun sequence
NZ_ACYH01000071
42.7 KB
48 CDS

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whole genome shotgun sequence
NZ_ACYH01000072
2.1 KB
1 CDS

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whole genome shotgun sequence
NZ_ACYH01000073
73.2 KB
109 CDS

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whole genome shotgun sequence
NZ_ACYH01000074
777 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACYH01000075
265 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACYH01000076
4.2 KB
4 CDS

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whole genome shotgun sequence
NZ_ACYH01000077
550 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACYH01000078
3.0 KB
0 CDS

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whole genome shotgun sequence
NZ_ACYH01000079
5.1 KB
3 CDS

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Taxonomy

External Links

Treponema vincentii ATCC 35580

Search Genome

Sequences

PubMed Search for Treponema vincentii ATCC 35580

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