uncultured methanogenic archaeon RC-I

Max Planck Institute

Genome Size: 3.2 megabases, GC Content: 54.6%, Released Date: July 21, 2006 #17655

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
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Sequences

Uncultured methanogenic archaeon RC-I, complete genome
NC_009464
3.0 MB
3085 CDS

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References

Genome of Rice Cluster I archaea--the key methane producers in the rice rhizosphere
Erkel,C., Kube,M., Reinhardt,R. and Liesack,W. Science 313 (5785), 370-372 (2006)
PubMed, PubGet, HubMed

Taxonomy

External Links

uncultured methanogenic archaeon RC-I

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Sequences

References

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