uncultured Termite group 1 bacterium phylotype Rs-D17

RIKEN, Japan

Genome Size: 1.12 megabases, GC Content: 35.2%, Released Date: March 18, 2008 #17654

Completed genome

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BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

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Sequences

Uncultured Termite group 1 bacterium phylotype Rs-D17, complete genome
NS_000191
1.1 MB
761 CDS

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Uncultured Termite group 1 bacterium phylotype Rs-D17 plasmid pTGRD1 DNA
NS_000192
11.4 KB
9 CDS

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Uncultured Termite group 1 bacterium phylotype Rs-D17 plasmid pTGRD2 DNA
NS_000193
5.6 KB
3 CDS

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Uncultured Termite group 1 bacterium phylotype Rs-D17 plasmid pTGRD3 DNA
NS_000194
5.2 KB
3 CDS

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References

Complete genome of the uncultured Termite Group 1 bacteria in a single host protist cell
Hongoh,Y., Sharma,V.K., Prakash,T., Noda,S., Taylor,T.D., Kudo,T., Sakaki,Y., Toyoda,A., Hattori,M. and Ohkuma,M. Proc. Natl. Acad. Sci. U.S.A. 105 (14), 5555-5560 (2008)
PubMed, PubGet, HubMed

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Taxonomy

External Links

uncultured Termite group 1 bacterium phylotype Rs-D17

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Sequences

References

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