unidentified eubacterium SCB49

J. Craig Venter Institute

GC Content: 34.0%, Released Date: June 21, 2007 #18586

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABCO01000001
570.5 KB
512 CDS

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whole genome shotgun sequence
NZ_ABCO01000002
437.9 KB
422 CDS

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whole genome shotgun sequence
NZ_ABCO01000003
371.2 KB
355 CDS

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whole genome shotgun sequence
NZ_ABCO01000004
358.3 KB
315 CDS

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whole genome shotgun sequence
NZ_ABCO01000005
234.7 KB
223 CDS

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whole genome shotgun sequence
NZ_ABCO01000006
217.4 KB
217 CDS

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whole genome shotgun sequence
NZ_ABCO01000007
163.2 KB
172 CDS

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whole genome shotgun sequence
NZ_ABCO01000008
158.0 KB
151 CDS

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whole genome shotgun sequence
NZ_ABCO01000009
152.9 KB
143 CDS

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whole genome shotgun sequence
NZ_ABCO01000010
140.0 KB
127 CDS

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whole genome shotgun sequence
NZ_ABCO01000011
139.6 KB
127 CDS

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whole genome shotgun sequence
NZ_ABCO01000012
54.8 KB
52 CDS

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whole genome shotgun sequence
NZ_ABCO01000013
42.3 KB
39 CDS

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whole genome shotgun sequence
NZ_ABCO01000014
37.1 KB
42 CDS

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whole genome shotgun sequence
NZ_ABCO01000015
20.1 KB
19 CDS

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whole genome shotgun sequence
NZ_ABCO01000016
9.8 KB
7 CDS

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whole genome shotgun sequence
NZ_ABCO01000017
8.2 KB
11 CDS

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whole genome shotgun sequence
NZ_ABCO01000018
7.1 KB
0 CDS

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whole genome shotgun sequence
NZ_ABCO01000019
5.0 KB
2 CDS

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whole genome shotgun sequence
NZ_ABCO01000020
2.3 KB
0 CDS

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whole genome shotgun sequence
NZ_ABCO01000021
2.3 KB
2 CDS

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whole genome shotgun sequence
NZ_ABCO01000022
2.2 KB
6 CDS

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whole genome shotgun sequence
NZ_ABCO01000023
1.6 KB
0 CDS

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whole genome shotgun sequence
NZ_ABCO01000024
1.0 KB
1 CDS

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whole genome shotgun sequence
NZ_ABCO01000025
1.0 KB
3 CDS

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Taxonomy

External Links

unidentified eubacterium SCB49

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Sequences

PubMed Search for unidentified eubacterium SCB49

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