Veillonella sp. oral taxon 158 str. F0412

J. Craig Venter Institute

Released Date: Dec. 2, 2010 #20754

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

ctg1126953305811, whole genome shotgun sequence
NZ_AENU01000001
15.3 KB
30 CDS

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ctg1126953305821, whole genome shotgun sequence
NZ_AENU01000002
885 bytes
0 CDS

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ctg1126953305807, whole genome shotgun sequence
NZ_AENU01000003
149.6 KB
282 CDS

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ctg1126953305817, whole genome shotgun sequence
NZ_AENU01000004
3.4 KB
10 CDS

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ctg1126953305802, whole genome shotgun sequence
NZ_AENU01000005
44.0 KB
44 CDS

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ctg1126953305801, whole genome shotgun sequence
NZ_AENU01000006
3.5 KB
6 CDS

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ctg1126953305818, whole genome shotgun sequence
NZ_AENU01000007
386.0 KB
738 CDS

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ctg1126953305816, whole genome shotgun sequence
NZ_AENU01000008
1.9 KB
6 CDS

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ctg1126953305813, whole genome shotgun sequence
NZ_AENU01000009
78.8 KB
156 CDS

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ctg1126953305806, whole genome shotgun sequence
NZ_AENU01000010
52.3 KB
94 CDS

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ctg1126953305803, whole genome shotgun sequence
NZ_AENU01000011
1.2 KB
2 CDS

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ctg1126953305809, whole genome shotgun sequence
NZ_AENU01000012
75.1 KB
150 CDS

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ctg1126953305812, whole genome shotgun sequence
NZ_AENU01000013
3.4 KB
2 CDS

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ctg1126953305820, whole genome shotgun sequence
NZ_AENU01000014
155.4 KB
234 CDS

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ctg1126953305814, whole genome shotgun sequence
NZ_AENU01000015
52.5 KB
106 CDS

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ctg1126953305815, whole genome shotgun sequence
NZ_AENU01000016
73.6 KB
144 CDS

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ctg1126953305808, whole genome shotgun sequence
NZ_AENU01000017
56.4 KB
112 CDS

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ctg1126953305804, whole genome shotgun sequence
NZ_AENU01000018
409.4 KB
784 CDS

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ctg1126953305819, whole genome shotgun sequence
NZ_AENU01000019
358.0 KB
692 CDS

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ctg1126953305810, whole genome shotgun sequence
NZ_AENU01000020
73.0 KB
160 CDS

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ctg1126953305805, whole genome shotgun sequence
NZ_AENU01000021
132.1 KB
248 CDS

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Taxonomy

External Links

Veillonella sp. oral taxon 158 str. F0412

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Sequences

PubMed Search for Veillonella sp. oral taxon 158 str. F0412

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