Verrucomicrobiae bacterium DG1235

J. Craig Venter Institute

Genome Size: 5.8 megabases, GC Content: 54.3%, Released Date: July 15, 2008 #15338

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

unfinished sequence, whole genome shotgun sequence
NZ_ABSI01000001
39.2 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSI01000002
191.7 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSI01000003
17.5 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSI01000004
1.3 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSI01000005
550.7 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSI01000006
307.4 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSI01000007
190.4 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSI01000008
64.0 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSI01000009
121.1 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSI01000010
876.5 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSI01000011
1.2 MB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSI01000012
436.9 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSI01000013
612.4 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSI01000014
106.7 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSI01000015
2.0 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSI01000016
145.4 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSI01000017
168.4 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSI01000018
2.5 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSI01000019
2.5 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSI01000020
281.1 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSI01000021
119.5 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSI01000022
60.7 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSI01000023
112.3 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSI01000024
1.8 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSI01000025
1.6 KB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_ABSI01000026
1.7 KB
0 CDS

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Taxonomy

External Links

Verrucomicrobiae bacterium DG1235

Search Genome

Sequences

PubMed Search for Verrucomicrobiae bacterium DG1235

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