Vibrio cholera CIRS 101

National Microbial Pathogen Data Resource (NMPDR) team

Genome Size: 4.059 megabases, Released Date: Aug. 11, 2009 #18512

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ACVW01000001
2.2 KB
0 CDS

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whole genome shotgun sequence
NZ_ACVW01000002
15.9 KB
13 CDS

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whole genome shotgun sequence
NZ_ACVW01000003
63.1 KB
54 CDS

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whole genome shotgun sequence
NZ_ACVW01000004
74.1 KB
56 CDS

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whole genome shotgun sequence
NZ_ACVW01000005
69.1 KB
60 CDS

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whole genome shotgun sequence
NZ_ACVW01000006
90.3 KB
86 CDS

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whole genome shotgun sequence
NZ_ACVW01000007
164.4 KB
130 CDS

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whole genome shotgun sequence
NZ_ACVW01000008
225.8 KB
193 CDS

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whole genome shotgun sequence
NZ_ACVW01000009
225.5 KB
220 CDS

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whole genome shotgun sequence
NZ_ACVW01000010
311.0 KB
272 CDS

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whole genome shotgun sequence
NZ_ACVW01000011
350.7 KB
286 CDS

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whole genome shotgun sequence
NZ_ACVW01000012
384.3 KB
353 CDS

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whole genome shotgun sequence
NZ_ACVW01000013
478.0 KB
400 CDS

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whole genome shotgun sequence
NZ_ACVW01000014
1021.1 KB
919 CDS

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whole genome shotgun sequence
NZ_ACVW01000015
75.2 KB
76 CDS

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whole genome shotgun sequence
NZ_ACVW01000016
343.3 KB
277 CDS

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whole genome shotgun sequence
NZ_ACVW01000017
7.0 KB
5 CDS

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whole genome shotgun sequence
NZ_ACVW01000018
63.8 KB
62 CDS

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Taxonomy

External Links

Vibrio cholera CIRS 101

Search Genome

Sequences

PubMed Search for Vibrio cholera CIRS 101

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