Vibrio cholerae 12129(1)

National Microbial Pathogen Data Resource

GC Content: 47.7%, Released Date: May 1, 2009 #18513

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ACFQ01000001
1.5 KB
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACFQ01000002
5.6 KB
5 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACFQ01000003
35.6 KB
36 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACFQ01000004
52.8 KB
51 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACFQ01000005
79.5 KB
73 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACFQ01000006
90.8 KB
91 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACFQ01000007
152.0 KB
130 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACFQ01000008
244.8 KB
244 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACFQ01000009
1.1 MB
1024 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACFQ01000010
1.7 MB
1562 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACFQ01000011
77.6 KB
77 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACFQ01000012
325.0 KB
281 CDS

Table view
Circular View
Artemis Viewer

Taxonomy

External Links

Vibrio cholerae 12129(1)

Search Genome

Sequences

PubMed Search for Vibrio cholerae 12129(1)

Related Genomes