Vibrio cholerae B33

National Microbial Pathogen Data Resource

GC Content: 47.4%, Released Date: May 1, 2009 #18517

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ACHZ01000001
1.6 KB
0 CDS

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whole genome shotgun sequence
NZ_ACHZ01000002
4.0 KB
0 CDS

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whole genome shotgun sequence
NZ_ACHZ01000003
19.2 KB
24 CDS

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whole genome shotgun sequence
NZ_ACHZ01000004
30.8 KB
28 CDS

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whole genome shotgun sequence
NZ_ACHZ01000005
51.8 KB
49 CDS

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whole genome shotgun sequence
NZ_ACHZ01000006
71.9 KB
60 CDS

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whole genome shotgun sequence
NZ_ACHZ01000007
75.0 KB
59 CDS

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whole genome shotgun sequence
NZ_ACHZ01000008
73.7 KB
67 CDS

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whole genome shotgun sequence
NZ_ACHZ01000009
90.5 KB
89 CDS

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whole genome shotgun sequence
NZ_ACHZ01000010
99.3 KB
100 CDS

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whole genome shotgun sequence
NZ_ACHZ01000011
74.1 KB
66 CDS

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whole genome shotgun sequence
NZ_ACHZ01000012
136.1 KB
116 CDS

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whole genome shotgun sequence
NZ_ACHZ01000013
164.1 KB
138 CDS

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whole genome shotgun sequence
NZ_ACHZ01000014
187.0 KB
225 CDS

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whole genome shotgun sequence
NZ_ACHZ01000015
242.0 KB
249 CDS

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whole genome shotgun sequence
NZ_ACHZ01000016
860.9 KB
778 CDS

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whole genome shotgun sequence
NZ_ACHZ01000017
1.8 MB
1700 CDS

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Taxonomy

External Links

Vibrio cholerae B33

Search Genome

Sequences

PubMed Search for Vibrio cholerae B33

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