Vibrio cholerae BX 330286

National Microbial Pathogen Data Resource

GC Content: 47.5%, Released Date: May 1, 2009 #18519

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ACIA01000001
18.0 KB
24 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACIA01000002
922.9 KB
809 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACIA01000003
1.0 MB
1061 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACIA01000004
211.9 KB
183 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACIA01000005
188.3 KB
174 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACIA01000006
1.1 MB
1064 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACIA01000007
168.9 KB
166 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACIA01000008
162.5 KB
151 CDS

Table view
Circular View
Artemis Viewer

Taxonomy

External Links

Vibrio cholerae BX 330286

Search Genome

Sequences

PubMed Search for Vibrio cholerae BX 330286

Related Genomes