Vibrio cholerae INDRE 91/1

National Microbial Pathogen Data Resource (NMPDR) team

Genome Size: 3.9 megabases, GC Content: 47.4%, Released Date: Oct. 23, 2009 #20758

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ADAK01000001
3.7 KB
1 CDS

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whole genome shotgun sequence
NZ_ADAK01000002
2.0 KB
2 CDS

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whole genome shotgun sequence
NZ_ADAK01000003
3.1 KB
4 CDS

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whole genome shotgun sequence
NZ_ADAK01000004
1.7 KB
0 CDS

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whole genome shotgun sequence
NZ_ADAK01000005
3.2 KB
0 CDS

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whole genome shotgun sequence
NZ_ADAK01000006
7.3 KB
8 CDS

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whole genome shotgun sequence
NZ_ADAK01000007
2.4 KB
3 CDS

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whole genome shotgun sequence
NZ_ADAK01000008
9.1 KB
6 CDS

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whole genome shotgun sequence
NZ_ADAK01000009
11.2 KB
11 CDS

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whole genome shotgun sequence
NZ_ADAK01000010
13.3 KB
11 CDS

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whole genome shotgun sequence
NZ_ADAK01000011
8.6 KB
11 CDS

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whole genome shotgun sequence
NZ_ADAK01000012
18.7 KB
13 CDS

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whole genome shotgun sequence
NZ_ADAK01000013
18.7 KB
19 CDS

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whole genome shotgun sequence
NZ_ADAK01000014
15.6 KB
16 CDS

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whole genome shotgun sequence
NZ_ADAK01000015
14.7 KB
12 CDS

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whole genome shotgun sequence
NZ_ADAK01000016
18.8 KB
22 CDS

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whole genome shotgun sequence
NZ_ADAK01000017
12.5 KB
9 CDS

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whole genome shotgun sequence
NZ_ADAK01000018
24.2 KB
22 CDS

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whole genome shotgun sequence
NZ_ADAK01000019
22.5 KB
22 CDS

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whole genome shotgun sequence
NZ_ADAK01000020
25.6 KB
18 CDS

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whole genome shotgun sequence
NZ_ADAK01000021
25.0 KB
25 CDS

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whole genome shotgun sequence
NZ_ADAK01000022
20.3 KB
18 CDS

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whole genome shotgun sequence
NZ_ADAK01000023
24.7 KB
31 CDS

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whole genome shotgun sequence
NZ_ADAK01000024
5.3 KB
2 CDS

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whole genome shotgun sequence
NZ_ADAK01000025
32.5 KB
39 CDS

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whole genome shotgun sequence
NZ_ADAK01000026
36.5 KB
36 CDS

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whole genome shotgun sequence
NZ_ADAK01000027
32.0 KB
25 CDS

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whole genome shotgun sequence
NZ_ADAK01000028
46.7 KB
37 CDS

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whole genome shotgun sequence
NZ_ADAK01000029
43.6 KB
37 CDS

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whole genome shotgun sequence
NZ_ADAK01000030
44.1 KB
36 CDS

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whole genome shotgun sequence
NZ_ADAK01000031
40.0 KB
39 CDS

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whole genome shotgun sequence
NZ_ADAK01000032
47.9 KB
47 CDS

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whole genome shotgun sequence
NZ_ADAK01000033
42.3 KB
45 CDS

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whole genome shotgun sequence
NZ_ADAK01000034
11.8 KB
9 CDS

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whole genome shotgun sequence
NZ_ADAK01000035
53.1 KB
53 CDS

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whole genome shotgun sequence
NZ_ADAK01000036
64.3 KB
55 CDS

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whole genome shotgun sequence
NZ_ADAK01000037
57.6 KB
43 CDS

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whole genome shotgun sequence
NZ_ADAK01000038
55.9 KB
41 CDS

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whole genome shotgun sequence
NZ_ADAK01000039
61.8 KB
58 CDS

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whole genome shotgun sequence
NZ_ADAK01000040
15.0 KB
5 CDS

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whole genome shotgun sequence
NZ_ADAK01000041
73.3 KB
57 CDS

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whole genome shotgun sequence
NZ_ADAK01000042
69.5 KB
61 CDS

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whole genome shotgun sequence
NZ_ADAK01000043
78.8 KB
76 CDS

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whole genome shotgun sequence
NZ_ADAK01000044
75.4 KB
63 CDS

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whole genome shotgun sequence
NZ_ADAK01000045
82.3 KB
68 CDS

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whole genome shotgun sequence
NZ_ADAK01000046
82.7 KB
72 CDS

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whole genome shotgun sequence
NZ_ADAK01000047
95.9 KB
84 CDS

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whole genome shotgun sequence
NZ_ADAK01000048
127.6 KB
110 CDS

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whole genome shotgun sequence
NZ_ADAK01000049
144.0 KB
129 CDS

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whole genome shotgun sequence
NZ_ADAK01000050
161.6 KB
149 CDS

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whole genome shotgun sequence
NZ_ADAK01000051
155.6 KB
130 CDS

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whole genome shotgun sequence
NZ_ADAK01000052
190.9 KB
175 CDS

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whole genome shotgun sequence
NZ_ADAK01000053
252.1 KB
211 CDS

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whole genome shotgun sequence
NZ_ADAK01000054
256.2 KB
222 CDS

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whole genome shotgun sequence
NZ_ADAK01000055
265.5 KB
215 CDS

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whole genome shotgun sequence
NZ_ADAK01000056
324.8 KB
271 CDS

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whole genome shotgun sequence
NZ_ADAK01000057
95.4 KB
81 CDS

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whole genome shotgun sequence
NZ_ADAK01000058
56.1 KB
46 CDS

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whole genome shotgun sequence
NZ_ADAK01000059
152.2 KB
126 CDS

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whole genome shotgun sequence
NZ_ADAK01000060
118.2 KB
112 CDS

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Taxonomy

External Links

Vibrio cholerae INDRE 91/1

Search Genome

Sequences

PubMed Search for Vibrio cholerae INDRE 91/1

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