Vibrio cholerae M66-2

TEDA School of Biological Sciences and Biotechnology, Nankai University

Genome Size: 3.9 megabases, GC Content: 47.6%, Released Date: April 20, 2009 #17607

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

chromosome I, complete genome
NC_012578
2.8 MB
2650 CDS

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chromosome II, complete genome
NC_012580
1021.9 KB
1043 CDS

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Circular View
Artemis Viewer

References

A recalibrated molecular clock and independent origins for the cholera pandemic clones
Feng,L., Reeves,P.R., Lan,R., Ren,Y., Gao,C., Zhou,Z., Ren,Y., Cheng,J., Wang,W., Wang,J., Qian,W., Li,D. and Wang,L. PLoS ONE 3 (12), E4053 (2008)
PubMed, PubGet, HubMed

Taxonomy

External Links

Vibrio cholerae M66-2

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Sequences

References

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