Vibrio cholerae MJ-1236

Los Alamos National Laboratory (LANL), National Microbial Pathogen Data Resource (NMPDR) , National Microbial Pathogen Data Resource , Argonne National Laboratory, USA, Argonne , Los Alamos National Laboratory

Genome Size: 4.2 megabases, GC Content: 47.3%, Released Date: May 4, 2009 #17608

Completed genome

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

chromosome 1, complete genome
NC_012668
3.0 MB
2768 CDS

Table view
Circular View
Artemis Viewer

chromosome 2, complete genome
NC_012667
1.0 MB
1004 CDS

Table view
Circular View
Artemis Viewer

Taxonomy

External Links

Vibrio cholerae MJ-1236

Search Genome

Sequences

PubMed Search for Vibrio cholerae MJ-1236

Related Genomes