Vibrio cholerae O395

TIGR , Broad Institute

Genome Size: 4.1 megabases, GC Content: 47.5%, Released Date: May 8, 2007 #17610

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

chromosome 1
NC_009456
1.1 MB
1133 CDS

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chromosome 2
NC_009457
2.9 MB
2742 CDS

Table view
Circular View
Artemis Viewer

References

A recalibrated molecular clock and independent origins for the cholera pandemic clones
Feng,L., Reeves,P.R., Lan,R., Ren,Y., Gao,C., Zhou,Z., Ren,Y., Cheng,J., Wang,W., Wang,J., Qian,W., Li,D. and Wang,L. PLoS ONE 3 (12), E4053 (2008)
PubMed, PubGet, HubMed

Taxonomy

External Links

Vibrio cholerae O395

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Sequences

References

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