Vibrio cholerae RC27

National Microbial Pathogen Data Resource (NMPDR) team

Genome Size: 4.0 megabases, GC Content: 47.4%, Released Date: Oct. 23, 2009 #20762

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ADAI01000001
3.4 KB
0 CDS

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whole genome shotgun sequence
NZ_ADAI01000002
2.4 KB
2 CDS

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whole genome shotgun sequence
NZ_ADAI01000003
4.2 KB
3 CDS

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whole genome shotgun sequence
NZ_ADAI01000004
5.4 KB
5 CDS

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whole genome shotgun sequence
NZ_ADAI01000005
5.7 KB
3 CDS

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whole genome shotgun sequence
NZ_ADAI01000006
7.3 KB
2 CDS

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whole genome shotgun sequence
NZ_ADAI01000007
2.7 KB
1 CDS

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whole genome shotgun sequence
NZ_ADAI01000008
2.7 KB
0 CDS

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whole genome shotgun sequence
NZ_ADAI01000009
3.1 KB
4 CDS

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whole genome shotgun sequence
NZ_ADAI01000010
25.8 KB
27 CDS

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whole genome shotgun sequence
NZ_ADAI01000011
29.8 KB
30 CDS

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whole genome shotgun sequence
NZ_ADAI01000012
40.2 KB
34 CDS

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whole genome shotgun sequence
NZ_ADAI01000013
32.5 KB
28 CDS

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whole genome shotgun sequence
NZ_ADAI01000014
32.5 KB
27 CDS

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whole genome shotgun sequence
NZ_ADAI01000015
36.7 KB
37 CDS

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whole genome shotgun sequence
NZ_ADAI01000016
34.9 KB
24 CDS

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whole genome shotgun sequence
NZ_ADAI01000017
43.2 KB
43 CDS

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whole genome shotgun sequence
NZ_ADAI01000018
42.6 KB
41 CDS

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whole genome shotgun sequence
NZ_ADAI01000019
42.8 KB
36 CDS

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whole genome shotgun sequence
NZ_ADAI01000020
45.2 KB
39 CDS

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whole genome shotgun sequence
NZ_ADAI01000021
40.8 KB
39 CDS

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whole genome shotgun sequence
NZ_ADAI01000022
53.4 KB
48 CDS

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whole genome shotgun sequence
NZ_ADAI01000023
49.5 KB
41 CDS

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whole genome shotgun sequence
NZ_ADAI01000024
54.4 KB
39 CDS

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whole genome shotgun sequence
NZ_ADAI01000025
73.9 KB
64 CDS

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whole genome shotgun sequence
NZ_ADAI01000026
59.1 KB
59 CDS

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whole genome shotgun sequence
NZ_ADAI01000027
64.3 KB
58 CDS

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whole genome shotgun sequence
NZ_ADAI01000028
70.1 KB
57 CDS

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whole genome shotgun sequence
NZ_ADAI01000029
82.2 KB
72 CDS

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whole genome shotgun sequence
NZ_ADAI01000030
79.7 KB
66 CDS

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whole genome shotgun sequence
NZ_ADAI01000031
78.6 KB
89 CDS

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whole genome shotgun sequence
NZ_ADAI01000032
106.5 KB
90 CDS

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whole genome shotgun sequence
NZ_ADAI01000033
111.8 KB
102 CDS

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whole genome shotgun sequence
NZ_ADAI01000034
168.8 KB
186 CDS

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whole genome shotgun sequence
NZ_ADAI01000035
202.2 KB
163 CDS

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whole genome shotgun sequence
NZ_ADAI01000036
213.0 KB
198 CDS

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whole genome shotgun sequence
NZ_ADAI01000037
242.6 KB
211 CDS

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whole genome shotgun sequence
NZ_ADAI01000038
249.1 KB
206 CDS

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whole genome shotgun sequence
NZ_ADAI01000039
247.7 KB
210 CDS

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whole genome shotgun sequence
NZ_ADAI01000040
312.7 KB
256 CDS

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whole genome shotgun sequence
NZ_ADAI01000041
395.9 KB
321 CDS

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whole genome shotgun sequence
NZ_ADAI01000042
207.2 KB
177 CDS

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whole genome shotgun sequence
NZ_ADAI01000043
163.3 KB
147 CDS

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whole genome shotgun sequence
NZ_ADAI01000044
77.6 KB
90 CDS

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whole genome shotgun sequence
NZ_ADAI01000045
69.9 KB
62 CDS

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Taxonomy

External Links

Vibrio cholerae RC27

Search Genome

Sequences

PubMed Search for Vibrio cholerae RC27

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