Vibrio cholerae RC9

National Microbial Pathogen Data Resource

GC Content: 47.7%, Released Date: May 1, 2009 #18524

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ACHX01000001
2.2 KB
1 CDS

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whole genome shotgun sequence
NZ_ACHX01000002
12.4 KB
16 CDS

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whole genome shotgun sequence
NZ_ACHX01000003
72.5 KB
74 CDS

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whole genome shotgun sequence
NZ_ACHX01000004
55.5 KB
47 CDS

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whole genome shotgun sequence
NZ_ACHX01000005
96.6 KB
81 CDS

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whole genome shotgun sequence
NZ_ACHX01000006
167.3 KB
141 CDS

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whole genome shotgun sequence
NZ_ACHX01000007
380.5 KB
402 CDS

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whole genome shotgun sequence
NZ_ACHX01000008
417.7 KB
414 CDS

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whole genome shotgun sequence
NZ_ACHX01000009
662.7 KB
611 CDS

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whole genome shotgun sequence
NZ_ACHX01000010
787.0 KB
708 CDS

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whole genome shotgun sequence
NZ_ACHX01000011
1.4 MB
1316 CDS

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Taxonomy

External Links

Vibrio cholerae RC9

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Sequences

PubMed Search for Vibrio cholerae RC9

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