Vibrio cholerae TM 11079-80

National Microbial Pathogen Data Resource

GC Content: 47.7%, Released Date: May 1, 2009 #18525

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ACHW01000001
2.1 KB
1 CDS

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whole genome shotgun sequence
NZ_ACHW01000002
3.1 KB
1 CDS

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whole genome shotgun sequence
NZ_ACHW01000003
2.7 KB
2 CDS

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whole genome shotgun sequence
NZ_ACHW01000004
2.2 KB
0 CDS

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whole genome shotgun sequence
NZ_ACHW01000005
5.3 KB
4 CDS

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whole genome shotgun sequence
NZ_ACHW01000006
6.8 KB
5 CDS

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whole genome shotgun sequence
NZ_ACHW01000007
8.5 KB
9 CDS

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whole genome shotgun sequence
NZ_ACHW01000008
20.0 KB
23 CDS

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whole genome shotgun sequence
NZ_ACHW01000009
26.5 KB
22 CDS

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whole genome shotgun sequence
NZ_ACHW01000010
21.0 KB
23 CDS

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whole genome shotgun sequence
NZ_ACHW01000011
38.6 KB
41 CDS

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whole genome shotgun sequence
NZ_ACHW01000012
44.7 KB
33 CDS

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whole genome shotgun sequence
NZ_ACHW01000013
85.2 KB
68 CDS

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whole genome shotgun sequence
NZ_ACHW01000014
96.6 KB
91 CDS

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whole genome shotgun sequence
NZ_ACHW01000015
105.0 KB
101 CDS

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whole genome shotgun sequence
NZ_ACHW01000016
140.2 KB
125 CDS

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whole genome shotgun sequence
NZ_ACHW01000017
147.2 KB
141 CDS

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whole genome shotgun sequence
NZ_ACHW01000018
145.1 KB
131 CDS

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whole genome shotgun sequence
NZ_ACHW01000019
158.9 KB
136 CDS

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whole genome shotgun sequence
NZ_ACHW01000020
203.8 KB
184 CDS

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whole genome shotgun sequence
NZ_ACHW01000021
183.1 KB
158 CDS

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whole genome shotgun sequence
NZ_ACHW01000022
232.2 KB
193 CDS

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whole genome shotgun sequence
NZ_ACHW01000023
282.6 KB
239 CDS

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whole genome shotgun sequence
NZ_ACHW01000024
261.4 KB
263 CDS

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whole genome shotgun sequence
NZ_ACHW01000025
415.5 KB
404 CDS

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whole genome shotgun sequence
NZ_ACHW01000026
584.5 KB
534 CDS

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whole genome shotgun sequence
NZ_ACHW01000027
4.2 KB
2 CDS

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whole genome shotgun sequence
NZ_ACHW01000028
256.4 KB
226 CDS

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whole genome shotgun sequence
NZ_ACHW01000029
6.6 KB
10 CDS

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whole genome shotgun sequence
NZ_ACHW01000030
123.9 KB
117 CDS

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whole genome shotgun sequence
NZ_ACHW01000031
2.6 KB
5 CDS

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whole genome shotgun sequence
NZ_ACHW01000032
3.2 KB
6 CDS

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whole genome shotgun sequence
NZ_ACHW01000033
5.2 KB
9 CDS

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whole genome shotgun sequence
NZ_ACHW01000034
5.9 KB
6 CDS

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whole genome shotgun sequence
NZ_ACHW01000035
329.1 KB
308 CDS

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Taxonomy

External Links

Vibrio cholerae TM 11079-80

Search Genome

Sequences

PubMed Search for Vibrio cholerae TM 11079-80

Related Genomes