Vibrio cholerae TMA 21

National Microbial Pathogen Data Resource

GC Content: 47.6%, Released Date: May 1, 2009 #18526

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ACHY01000001
1.8 KB
0 CDS

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whole genome shotgun sequence
NZ_ACHY01000002
8.7 KB
4 CDS

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whole genome shotgun sequence
NZ_ACHY01000003
39.7 KB
34 CDS

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whole genome shotgun sequence
NZ_ACHY01000004
36.1 KB
29 CDS

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whole genome shotgun sequence
NZ_ACHY01000005
44.2 KB
38 CDS

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whole genome shotgun sequence
NZ_ACHY01000006
54.9 KB
42 CDS

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whole genome shotgun sequence
NZ_ACHY01000007
64.9 KB
62 CDS

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whole genome shotgun sequence
NZ_ACHY01000008
56.3 KB
47 CDS

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whole genome shotgun sequence
NZ_ACHY01000009
73.2 KB
56 CDS

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whole genome shotgun sequence
NZ_ACHY01000010
124.0 KB
109 CDS

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whole genome shotgun sequence
NZ_ACHY01000011
166.7 KB
150 CDS

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whole genome shotgun sequence
NZ_ACHY01000012
217.5 KB
204 CDS

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whole genome shotgun sequence
NZ_ACHY01000013
248.9 KB
277 CDS

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whole genome shotgun sequence
NZ_ACHY01000014
247.5 KB
254 CDS

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whole genome shotgun sequence
NZ_ACHY01000015
490.3 KB
439 CDS

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whole genome shotgun sequence
NZ_ACHY01000016
835.5 KB
760 CDS

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whole genome shotgun sequence
NZ_ACHY01000017
586.2 KB
513 CDS

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whole genome shotgun sequence
NZ_ACHY01000018
473.5 KB
421 CDS

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whole genome shotgun sequence
NZ_ACHY01000019
82.6 KB
83 CDS

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whole genome shotgun sequence
NZ_ACHY01000020
76.8 KB
78 CDS

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Taxonomy

External Links

Vibrio cholerae TMA 21

Search Genome

Sequences

PubMed Search for Vibrio cholerae TMA 21

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