Vibrio coralliilyticus ATCC BAA-450

National Microbial Pathogen Data Resource (NMPDR) team

Genome Size: 5.7 megabases, GC Content: 45.7%, Released Date: Oct. 6, 2009 #20763

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ACZN01000001
2.2 KB
0 CDS

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whole genome shotgun sequence
NZ_ACZN01000002
4.4 KB
0 CDS

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whole genome shotgun sequence
NZ_ACZN01000003
18.6 KB
20 CDS

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whole genome shotgun sequence
NZ_ACZN01000004
14.2 KB
12 CDS

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whole genome shotgun sequence
NZ_ACZN01000005
28.0 KB
21 CDS

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whole genome shotgun sequence
NZ_ACZN01000006
41.1 KB
39 CDS

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whole genome shotgun sequence
NZ_ACZN01000007
65.4 KB
53 CDS

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whole genome shotgun sequence
NZ_ACZN01000008
82.7 KB
80 CDS

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whole genome shotgun sequence
NZ_ACZN01000009
92.6 KB
86 CDS

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whole genome shotgun sequence
NZ_ACZN01000010
80.7 KB
77 CDS

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whole genome shotgun sequence
NZ_ACZN01000011
105.2 KB
94 CDS

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whole genome shotgun sequence
NZ_ACZN01000012
140.2 KB
119 CDS

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whole genome shotgun sequence
NZ_ACZN01000013
441.5 KB
397 CDS

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whole genome shotgun sequence
NZ_ACZN01000014
389.3 KB
363 CDS

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whole genome shotgun sequence
NZ_ACZN01000015
843.0 KB
733 CDS

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whole genome shotgun sequence
NZ_ACZN01000016
897.7 KB
814 CDS

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whole genome shotgun sequence
NZ_ACZN01000017
924.5 KB
827 CDS

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whole genome shotgun sequence
NZ_ACZN01000018
1.1 MB
1011 CDS

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whole genome shotgun sequence
NZ_ACZN01000019
63.2 KB
57 CDS

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whole genome shotgun sequence
NZ_ACZN01000020
231.8 KB
219 CDS

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Taxonomy

External Links

Vibrio coralliilyticus ATCC BAA-450

Search Genome

Sequences

PubMed Search for Vibrio coralliilyticus ATCC BAA-450

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