Vibrio furnissii CIP 102972

National Microbial Pathogen Data Resource (NMPDR) team

Genome Size: 5.0 megabases, GC Content: 50.6%, Released Date: Oct. 6, 2009 #20764

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ACZP01000001
2.4 KB
0 CDS

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whole genome shotgun sequence
NZ_ACZP01000002
10.1 KB
10 CDS

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whole genome shotgun sequence
NZ_ACZP01000003
17.5 KB
22 CDS

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whole genome shotgun sequence
NZ_ACZP01000004
24.9 KB
23 CDS

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whole genome shotgun sequence
NZ_ACZP01000005
42.3 KB
41 CDS

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whole genome shotgun sequence
NZ_ACZP01000006
60.9 KB
57 CDS

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whole genome shotgun sequence
NZ_ACZP01000007
56.4 KB
42 CDS

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whole genome shotgun sequence
NZ_ACZP01000008
49.0 KB
40 CDS

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whole genome shotgun sequence
NZ_ACZP01000009
53.6 KB
46 CDS

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whole genome shotgun sequence
NZ_ACZP01000010
81.0 KB
75 CDS

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whole genome shotgun sequence
NZ_ACZP01000011
138.2 KB
135 CDS

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whole genome shotgun sequence
NZ_ACZP01000012
261.5 KB
254 CDS

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whole genome shotgun sequence
NZ_ACZP01000013
1.3 MB
1223 CDS

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whole genome shotgun sequence
NZ_ACZP01000014
1.6 MB
1467 CDS

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whole genome shotgun sequence
NZ_ACZP01000015
57.8 KB
39 CDS

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whole genome shotgun sequence
NZ_ACZP01000016
72.7 KB
63 CDS

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whole genome shotgun sequence
NZ_ACZP01000017
100.4 KB
80 CDS

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whole genome shotgun sequence
NZ_ACZP01000018
269.8 KB
262 CDS

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whole genome shotgun sequence
NZ_ACZP01000019
80.9 KB
84 CDS

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whole genome shotgun sequence
NZ_ACZP01000020
244.4 KB
206 CDS

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whole genome shotgun sequence
NZ_ACZP01000021
83.4 KB
73 CDS

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whole genome shotgun sequence
NZ_ACZP01000022
132.6 KB
115 CDS

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whole genome shotgun sequence
NZ_ACZP01000023
59.4 KB
44 CDS

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whole genome shotgun sequence
NZ_ACZP01000024
16.0 KB
15 CDS

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Taxonomy

External Links

Vibrio furnissii CIP 102972

Search Genome

Sequences

PubMed Search for Vibrio furnissii CIP 102972

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