Vibrio harveyi 1DA3

LNCC

Genome Size: 5.9 megabases, GC Content: 45.6%, Released Date: Nov. 23, 2009 #20765

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ACZC01000001
110.8 KB
97 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000002
189.1 KB
166 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000003
85.2 KB
82 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000004
52.6 KB
45 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000005
88.5 KB
88 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000006
88.2 KB
79 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000007
59.1 KB
60 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000008
300.5 KB
252 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000009
67.6 KB
74 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000010
105.6 KB
88 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000011
110.8 KB
106 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000012
78.3 KB
76 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000013
309.5 KB
272 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000014
159.6 KB
139 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000015
90.1 KB
83 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000016
188.9 KB
136 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000017
174.1 KB
130 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000018
74.7 KB
58 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000019
54.2 KB
35 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000020
88.2 KB
78 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000021
101.0 KB
94 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000022
55.0 KB
52 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000023
143.4 KB
134 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000024
47.0 KB
40 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000025
47.3 KB
40 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000026
33.9 KB
30 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000027
1.3 KB
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000028
104.1 KB
97 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000029
34.0 KB
31 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000030
114.8 KB
92 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000031
165.0 KB
145 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000032
124.3 KB
106 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000033
24.3 KB
20 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000034
32.6 KB
21 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000035
164.0 KB
141 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000036
62.6 KB
57 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000037
50.8 KB
42 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000038
46.2 KB
38 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000039
37.7 KB
36 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000040
85.2 KB
76 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000041
10.4 KB
8 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000042
29.9 KB
25 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000043
28.8 KB
20 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000044
62.6 KB
43 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000045
109.6 KB
91 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000046
21.9 KB
16 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000047
72.4 KB
65 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000048
67.1 KB
52 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000049
59.6 KB
57 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000050
115.3 KB
109 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000051
55.0 KB
48 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000052
8.5 KB
7 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000053
26.1 KB
24 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000054
59.4 KB
50 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000055
16.3 KB
13 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000056
47.8 KB
33 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000057
10.7 KB
12 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000058
76.3 KB
65 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000059
37.6 KB
36 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000060
84.5 KB
84 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000061
6.8 KB
5 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000062
88.5 KB
64 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000063
43.1 KB
35 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000064
2.7 KB
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000065
34.2 KB
28 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000066
21.5 KB
18 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000067
43.7 KB
40 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000068
13.6 KB
11 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000069
878 bytes
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000070
12.4 KB
3 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000071
42.6 KB
39 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000072
9.4 KB
4 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000073
107.9 KB
80 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000074
9.0 KB
5 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000075
18.6 KB
18 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000076
16.7 KB
12 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000077
13.7 KB
12 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000078
19.8 KB
19 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000079
52.4 KB
44 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000080
38.0 KB
32 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000081
12.0 KB
11 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000082
1.6 KB
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000083
28.6 KB
20 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000084
4.0 KB
3 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000085
6.5 KB
4 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000086
7.9 KB
4 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000087
11.7 KB
7 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000088
42.5 KB
38 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000089
5.2 KB
3 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000090
4.5 KB
3 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000091
5.0 KB
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000092
13.3 KB
12 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000093
3.3 KB
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000094
19.3 KB
16 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000095
6.0 KB
6 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000096
3.4 KB
3 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000097
6.9 KB
5 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000098
13.1 KB
10 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000099
2.2 KB
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000100
3.5 KB
3 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000101
563 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000102
5.8 KB
7 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000103
2.4 KB
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000104
2.6 KB
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000105
3.3 KB
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000106
2.7 KB
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000107
674 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000108
2.1 KB
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000109
715 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000110
789 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000111
739 bytes
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000112
2.6 KB
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000113
1.3 KB
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000114
1.8 KB
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000115
632 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000116
1.1 KB
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000117
630 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000118
641 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000119
686 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000120
867 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000121
544 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000122
562 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000123
552 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000124
606 bytes
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000125
523 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000126
597 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000127
740 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000128
658 bytes
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000129
653 bytes
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000130
511 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000131
816 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000132
545 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000133
679 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000134
930 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000135
775 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000136
598 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000137
607 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000138
590 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000139
673 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ACZC01000140
1.0 KB
0 CDS

Table view
Circular View
Artemis Viewer

References

Genomic taxonomy of vibrios
Thompson,C.C., Vicente,A.C., Souza,R.C., Vasconcelos,A.T., Vesth,T., Alves,N. Jr., Ussery,D.W., Iida,T. and Thompson,F.L. BMC Evol. Biol. 9, 258 (2009)
PubMed, PubGet, HubMed
Genomic taxonomy of vibrios
Thompson,C.C., Vicente,A.C., Souza,R.C., Vasconcelos,A.T., Vesth,T., Alves,N. Jr., Ussery,D.W., Iida,T. and Thompson,F.L. BMC Evol. Biol. 9, 258 (2009)
PubMed, PubGet, HubMed

Taxonomy

External Links

Vibrio harveyi 1DA3

Search Genome

Sequences

References

Related Genomes