Vibrio harveyi ATCC BAA-1116

Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine

Genome Size: 6.05 megabases, GC Content: 45.4%, Released Date: Aug. 28, 2007 #17613

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

chromosome I, complete genome
NC_009783
3.6 MB
3546 CDS

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chromosome II
NC_009784
2.1 MB
2373 CDS

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plasmid pVIBHAR
NC_009777
86.9 KB
120 CDS

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Taxonomy

External Links

Vibrio harveyi ATCC BAA-1116

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Sequences

PubMed Search for Vibrio harveyi ATCC BAA-1116

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