Vibrio parahaemolyticus AN-5034

J. Craig Venter Institute

GC Content: 45.3%, Released Date: Feb. 3, 2009 #18532

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ACFO01000001
257.5 KB
223 CDS

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whole genome shotgun sequence
NZ_ACFO01000002
25.5 KB
23 CDS

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whole genome shotgun sequence
NZ_ACFO01000003
30.1 KB
32 CDS

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whole genome shotgun sequence
NZ_ACFO01000004
80.0 KB
83 CDS

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whole genome shotgun sequence
NZ_ACFO01000005
58.6 KB
47 CDS

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whole genome shotgun sequence
NZ_ACFO01000006
18.8 KB
16 CDS

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whole genome shotgun sequence
NZ_ACFO01000007
91.2 KB
88 CDS

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whole genome shotgun sequence
NZ_ACFO01000008
170.2 KB
169 CDS

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whole genome shotgun sequence
NZ_ACFO01000009
338.1 KB
297 CDS

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whole genome shotgun sequence
NZ_ACFO01000010
38.0 KB
34 CDS

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whole genome shotgun sequence
NZ_ACFO01000011
77.5 KB
68 CDS

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whole genome shotgun sequence
NZ_ACFO01000012
8.8 KB
5 CDS

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whole genome shotgun sequence
NZ_ACFO01000013
461.8 KB
418 CDS

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whole genome shotgun sequence
NZ_ACFO01000014
1.5 KB
2 CDS

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whole genome shotgun sequence
NZ_ACFO01000015
1.7 KB
3 CDS

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whole genome shotgun sequence
NZ_ACFO01000016
403.7 KB
392 CDS

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whole genome shotgun sequence
NZ_ACFO01000017
33.3 KB
29 CDS

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whole genome shotgun sequence
NZ_ACFO01000018
47.2 KB
37 CDS

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whole genome shotgun sequence
NZ_ACFO01000019
12.7 KB
8 CDS

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whole genome shotgun sequence
NZ_ACFO01000020
22.6 KB
23 CDS

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whole genome shotgun sequence
NZ_ACFO01000021
114.1 KB
106 CDS

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whole genome shotgun sequence
NZ_ACFO01000022
25.3 KB
24 CDS

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whole genome shotgun sequence
NZ_ACFO01000023
1.2 KB
1 CDS

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whole genome shotgun sequence
NZ_ACFO01000024
19.3 KB
19 CDS

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whole genome shotgun sequence
NZ_ACFO01000025
10.4 KB
11 CDS

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whole genome shotgun sequence
NZ_ACFO01000026
11.6 KB
5 CDS

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whole genome shotgun sequence
NZ_ACFO01000027
2.6 KB
4 CDS

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whole genome shotgun sequence
NZ_ACFO01000028
4.7 KB
4 CDS

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whole genome shotgun sequence
NZ_ACFO01000029
412.6 KB
395 CDS

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whole genome shotgun sequence
NZ_ACFO01000030
146.1 KB
137 CDS

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whole genome shotgun sequence
NZ_ACFO01000031
89.8 KB
81 CDS

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whole genome shotgun sequence
NZ_ACFO01000032
137.1 KB
114 CDS

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whole genome shotgun sequence
NZ_ACFO01000033
7.4 KB
10 CDS

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whole genome shotgun sequence
NZ_ACFO01000034
9.3 KB
9 CDS

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whole genome shotgun sequence
NZ_ACFO01000035
1.6 KB
0 CDS

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whole genome shotgun sequence
NZ_ACFO01000036
27.7 KB
23 CDS

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whole genome shotgun sequence
NZ_ACFO01000037
1.0 KB
2 CDS

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whole genome shotgun sequence
NZ_ACFO01000038
4.1 KB
2 CDS

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whole genome shotgun sequence
NZ_ACFO01000039
21.8 KB
19 CDS

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whole genome shotgun sequence
NZ_ACFO01000040
11.0 KB
11 CDS

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whole genome shotgun sequence
NZ_ACFO01000041
97.2 KB
81 CDS

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whole genome shotgun sequence
NZ_ACFO01000042
11.2 KB
12 CDS

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whole genome shotgun sequence
NZ_ACFO01000043
100.2 KB
89 CDS

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whole genome shotgun sequence
NZ_ACFO01000044
17.6 KB
18 CDS

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whole genome shotgun sequence
NZ_ACFO01000045
10.1 KB
7 CDS

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whole genome shotgun sequence
NZ_ACFO01000046
42.9 KB
42 CDS

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whole genome shotgun sequence
NZ_ACFO01000047
18.2 KB
12 CDS

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whole genome shotgun sequence
NZ_ACFO01000048
66.2 KB
59 CDS

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whole genome shotgun sequence
NZ_ACFO01000049
235.6 KB
250 CDS

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whole genome shotgun sequence
NZ_ACFO01000050
1.1 MB
1072 CDS

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whole genome shotgun sequence
NZ_ACFO01000051
12.2 KB
12 CDS

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whole genome shotgun sequence
NZ_ACFO01000052
1.4 KB
1 CDS

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whole genome shotgun sequence
NZ_ACFO01000053
70.5 KB
68 CDS

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whole genome shotgun sequence
NZ_ACFO01000054
1.6 KB
0 CDS

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Taxonomy

External Links

Vibrio parahaemolyticus AN-5034

Search Genome

Sequences

PubMed Search for Vibrio parahaemolyticus AN-5034

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