Vibrio parahaemolyticus AQ4037

J. Craig Venter Institute

GC Content: 45.4%, Released Date: Feb. 3, 2009 #18534

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ACFN01000001
12.0 KB
13 CDS

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whole genome shotgun sequence
NZ_ACFN01000002
5.0 KB
6 CDS

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whole genome shotgun sequence
NZ_ACFN01000003
9.6 KB
14 CDS

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whole genome shotgun sequence
NZ_ACFN01000004
21.9 KB
22 CDS

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whole genome shotgun sequence
NZ_ACFN01000005
13.0 KB
15 CDS

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whole genome shotgun sequence
NZ_ACFN01000006
1.3 KB
1 CDS

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whole genome shotgun sequence
NZ_ACFN01000007
105.2 KB
96 CDS

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whole genome shotgun sequence
NZ_ACFN01000008
2.1 KB
3 CDS

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whole genome shotgun sequence
NZ_ACFN01000009
1.1 KB
3 CDS

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whole genome shotgun sequence
NZ_ACFN01000010
2.3 KB
2 CDS

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whole genome shotgun sequence
NZ_ACFN01000011
32.6 KB
30 CDS

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whole genome shotgun sequence
NZ_ACFN01000012
4.7 KB
3 CDS

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whole genome shotgun sequence
NZ_ACFN01000013
1.2 KB
0 CDS

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whole genome shotgun sequence
NZ_ACFN01000014
168.7 KB
165 CDS

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whole genome shotgun sequence
NZ_ACFN01000015
3.8 KB
3 CDS

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whole genome shotgun sequence
NZ_ACFN01000016
70.0 KB
75 CDS

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whole genome shotgun sequence
NZ_ACFN01000017
2.3 KB
3 CDS

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whole genome shotgun sequence
NZ_ACFN01000018
10.5 KB
8 CDS

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whole genome shotgun sequence
NZ_ACFN01000019
2.2 KB
2 CDS

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whole genome shotgun sequence
NZ_ACFN01000020
2.9 KB
6 CDS

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whole genome shotgun sequence
NZ_ACFN01000021
1.9 KB
3 CDS

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whole genome shotgun sequence
NZ_ACFN01000022
2.2 KB
3 CDS

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whole genome shotgun sequence
NZ_ACFN01000023
15.3 KB
16 CDS

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whole genome shotgun sequence
NZ_ACFN01000024
12.5 KB
11 CDS

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whole genome shotgun sequence
NZ_ACFN01000025
1.4 KB
2 CDS

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whole genome shotgun sequence
NZ_ACFN01000026
6.5 KB
9 CDS

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whole genome shotgun sequence
NZ_ACFN01000027
38.6 KB
37 CDS

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whole genome shotgun sequence
NZ_ACFN01000028
41.0 KB
40 CDS

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whole genome shotgun sequence
NZ_ACFN01000029
83.6 KB
69 CDS

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whole genome shotgun sequence
NZ_ACFN01000030
2.1 KB
3 CDS

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whole genome shotgun sequence
NZ_ACFN01000031
216.7 KB
218 CDS

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whole genome shotgun sequence
NZ_ACFN01000032
201.2 KB
174 CDS

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whole genome shotgun sequence
NZ_ACFN01000033
16.6 KB
13 CDS

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whole genome shotgun sequence
NZ_ACFN01000034
1.7 KB
2 CDS

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whole genome shotgun sequence
NZ_ACFN01000035
20.7 KB
19 CDS

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whole genome shotgun sequence
NZ_ACFN01000036
86.5 KB
87 CDS

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whole genome shotgun sequence
NZ_ACFN01000037
72.3 KB
70 CDS

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whole genome shotgun sequence
NZ_ACFN01000038
43.0 KB
39 CDS

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whole genome shotgun sequence
NZ_ACFN01000039
2.1 KB
3 CDS

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whole genome shotgun sequence
NZ_ACFN01000040
236.1 KB
207 CDS

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whole genome shotgun sequence
NZ_ACFN01000041
1.4 KB
3 CDS

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whole genome shotgun sequence
NZ_ACFN01000042
8.1 KB
10 CDS

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whole genome shotgun sequence
NZ_ACFN01000043
1.7 KB
2 CDS

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whole genome shotgun sequence
NZ_ACFN01000044
21.8 KB
16 CDS

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whole genome shotgun sequence
NZ_ACFN01000045
6.8 KB
6 CDS

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whole genome shotgun sequence
NZ_ACFN01000046
38.6 KB
38 CDS

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whole genome shotgun sequence
NZ_ACFN01000047
11.5 KB
6 CDS

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whole genome shotgun sequence
NZ_ACFN01000048
26.2 KB
21 CDS

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whole genome shotgun sequence
NZ_ACFN01000049
9.3 KB
8 CDS

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whole genome shotgun sequence
NZ_ACFN01000050
10.6 KB
15 CDS

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whole genome shotgun sequence
NZ_ACFN01000051
14.0 KB
10 CDS

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whole genome shotgun sequence
NZ_ACFN01000052
2.7 KB
5 CDS

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whole genome shotgun sequence
NZ_ACFN01000053
19.1 KB
5 CDS

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whole genome shotgun sequence
NZ_ACFN01000054
15.6 KB
14 CDS

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whole genome shotgun sequence
NZ_ACFN01000055
37.9 KB
34 CDS

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whole genome shotgun sequence
NZ_ACFN01000056
33.1 KB
28 CDS

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whole genome shotgun sequence
NZ_ACFN01000057
2.3 KB
5 CDS

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whole genome shotgun sequence
NZ_ACFN01000058
42.6 KB
42 CDS

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whole genome shotgun sequence
NZ_ACFN01000059
11.3 KB
12 CDS

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whole genome shotgun sequence
NZ_ACFN01000060
1.1 KB
2 CDS

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whole genome shotgun sequence
NZ_ACFN01000061
166.7 KB
175 CDS

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whole genome shotgun sequence
NZ_ACFN01000062
10.3 KB
10 CDS

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whole genome shotgun sequence
NZ_ACFN01000063
2.4 KB
4 CDS

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whole genome shotgun sequence
NZ_ACFN01000064
1.7 KB
2 CDS

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whole genome shotgun sequence
NZ_ACFN01000065
89.4 KB
89 CDS

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whole genome shotgun sequence
NZ_ACFN01000066
2.0 KB
2 CDS

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whole genome shotgun sequence
NZ_ACFN01000067
24.7 KB
18 CDS

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whole genome shotgun sequence
NZ_ACFN01000068
1.5 KB
2 CDS

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whole genome shotgun sequence
NZ_ACFN01000069
4.2 KB
3 CDS

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whole genome shotgun sequence
NZ_ACFN01000070
46.3 KB
46 CDS

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whole genome shotgun sequence
NZ_ACFN01000071
32.9 KB
29 CDS

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whole genome shotgun sequence
NZ_ACFN01000072
49.7 KB
53 CDS

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whole genome shotgun sequence
NZ_ACFN01000073
9.5 KB
6 CDS

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whole genome shotgun sequence
NZ_ACFN01000074
4.7 KB
5 CDS

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whole genome shotgun sequence
NZ_ACFN01000075
60.0 KB
53 CDS

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whole genome shotgun sequence
NZ_ACFN01000076
9.5 KB
8 CDS

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whole genome shotgun sequence
NZ_ACFN01000077
10.3 KB
9 CDS

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whole genome shotgun sequence
NZ_ACFN01000078
7.8 KB
7 CDS

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whole genome shotgun sequence
NZ_ACFN01000079
1.6 KB
2 CDS

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whole genome shotgun sequence
NZ_ACFN01000080
1.8 KB
2 CDS

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whole genome shotgun sequence
NZ_ACFN01000081
32.2 KB
16 CDS

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whole genome shotgun sequence
NZ_ACFN01000082
66.1 KB
53 CDS

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whole genome shotgun sequence
NZ_ACFN01000083
19.9 KB
20 CDS

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whole genome shotgun sequence
NZ_ACFN01000084
1.3 KB
1 CDS

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whole genome shotgun sequence
NZ_ACFN01000085
46.5 KB
40 CDS

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whole genome shotgun sequence
NZ_ACFN01000086
17.5 KB
14 CDS

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whole genome shotgun sequence
NZ_ACFN01000087
1.9 KB
3 CDS

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whole genome shotgun sequence
NZ_ACFN01000088
34.8 KB
31 CDS

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whole genome shotgun sequence
NZ_ACFN01000089
182.9 KB
159 CDS

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whole genome shotgun sequence
NZ_ACFN01000090
185.7 KB
151 CDS

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whole genome shotgun sequence
NZ_ACFN01000091
34.5 KB
32 CDS

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whole genome shotgun sequence
NZ_ACFN01000092
20.8 KB
19 CDS

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whole genome shotgun sequence
NZ_ACFN01000093
40.8 KB
35 CDS

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whole genome shotgun sequence
NZ_ACFN01000094
19.2 KB
22 CDS

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whole genome shotgun sequence
NZ_ACFN01000095
48.5 KB
44 CDS

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whole genome shotgun sequence
NZ_ACFN01000096
1.2 KB
2 CDS

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whole genome shotgun sequence
NZ_ACFN01000097
57.3 KB
50 CDS

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whole genome shotgun sequence
NZ_ACFN01000098
24.2 KB
21 CDS

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whole genome shotgun sequence
NZ_ACFN01000099
22.0 KB
18 CDS

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whole genome shotgun sequence
NZ_ACFN01000100
1.0 KB
3 CDS

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whole genome shotgun sequence
NZ_ACFN01000101
1.5 KB
3 CDS

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whole genome shotgun sequence
NZ_ACFN01000102
45.5 KB
33 CDS

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whole genome shotgun sequence
NZ_ACFN01000103
87.7 KB
89 CDS

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whole genome shotgun sequence
NZ_ACFN01000104
9.0 KB
7 CDS

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whole genome shotgun sequence
NZ_ACFN01000105
34.0 KB
34 CDS

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whole genome shotgun sequence
NZ_ACFN01000106
1.8 KB
2 CDS

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whole genome shotgun sequence
NZ_ACFN01000107
1.7 KB
3 CDS

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whole genome shotgun sequence
NZ_ACFN01000108
8.8 KB
4 CDS

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whole genome shotgun sequence
NZ_ACFN01000109
1.7 KB
3 CDS

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whole genome shotgun sequence
NZ_ACFN01000110
8.5 KB
10 CDS

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whole genome shotgun sequence
NZ_ACFN01000111
2.7 KB
4 CDS

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whole genome shotgun sequence
NZ_ACFN01000112
16.3 KB
14 CDS

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whole genome shotgun sequence
NZ_ACFN01000113
6.3 KB
7 CDS

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whole genome shotgun sequence
NZ_ACFN01000114
2.2 KB
2 CDS

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whole genome shotgun sequence
NZ_ACFN01000115
5.0 KB
5 CDS

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whole genome shotgun sequence
NZ_ACFN01000116
1.7 KB
2 CDS

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whole genome shotgun sequence
NZ_ACFN01000117
2.5 KB
3 CDS

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whole genome shotgun sequence
NZ_ACFN01000118
1.5 KB
2 CDS

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whole genome shotgun sequence
NZ_ACFN01000119
1.1 KB
2 CDS

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whole genome shotgun sequence
NZ_ACFN01000120
1.2 KB
2 CDS

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whole genome shotgun sequence
NZ_ACFN01000121
39.9 KB
42 CDS

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whole genome shotgun sequence
NZ_ACFN01000122
36.4 KB
23 CDS

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whole genome shotgun sequence
NZ_ACFN01000123
54.2 KB
44 CDS

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whole genome shotgun sequence
NZ_ACFN01000124
156.3 KB
145 CDS

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whole genome shotgun sequence
NZ_ACFN01000125
43.3 KB
41 CDS

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whole genome shotgun sequence
NZ_ACFN01000126
7.1 KB
8 CDS

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whole genome shotgun sequence
NZ_ACFN01000127
18.7 KB
19 CDS

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whole genome shotgun sequence
NZ_ACFN01000128
3.9 KB
0 CDS

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whole genome shotgun sequence
NZ_ACFN01000129
29.2 KB
38 CDS

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whole genome shotgun sequence
NZ_ACFN01000130
1.5 KB
3 CDS

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whole genome shotgun sequence
NZ_ACFN01000131
48.1 KB
44 CDS

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whole genome shotgun sequence
NZ_ACFN01000132
1.7 KB
2 CDS

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whole genome shotgun sequence
NZ_ACFN01000133
1.6 KB
3 CDS

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whole genome shotgun sequence
NZ_ACFN01000134
125.8 KB
121 CDS

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whole genome shotgun sequence
NZ_ACFN01000135
2.0 KB
2 CDS

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whole genome shotgun sequence
NZ_ACFN01000136
24.9 KB
26 CDS

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whole genome shotgun sequence
NZ_ACFN01000137
1.2 KB
2 CDS

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whole genome shotgun sequence
NZ_ACFN01000138
4.2 KB
4 CDS

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whole genome shotgun sequence
NZ_ACFN01000139
1.0 KB
0 CDS

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whole genome shotgun sequence
NZ_ACFN01000140
123.9 KB
117 CDS

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whole genome shotgun sequence
NZ_ACFN01000141
58.1 KB
57 CDS

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whole genome shotgun sequence
NZ_ACFN01000142
47.4 KB
47 CDS

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whole genome shotgun sequence
NZ_ACFN01000143
21.1 KB
17 CDS

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whole genome shotgun sequence
NZ_ACFN01000144
41.0 KB
35 CDS

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whole genome shotgun sequence
NZ_ACFN01000145
1.7 KB
3 CDS

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whole genome shotgun sequence
NZ_ACFN01000146
64.3 KB
51 CDS

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whole genome shotgun sequence
NZ_ACFN01000147
40.4 KB
27 CDS

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whole genome shotgun sequence
NZ_ACFN01000148
27.1 KB
25 CDS

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whole genome shotgun sequence
NZ_ACFN01000149
6.8 KB
8 CDS

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whole genome shotgun sequence
NZ_ACFN01000150
1.9 KB
2 CDS

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whole genome shotgun sequence
NZ_ACFN01000151
18.2 KB
19 CDS

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whole genome shotgun sequence
NZ_ACFN01000152
26.0 KB
24 CDS

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whole genome shotgun sequence
NZ_ACFN01000153
18.4 KB
17 CDS

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whole genome shotgun sequence
NZ_ACFN01000154
32.1 KB
23 CDS

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whole genome shotgun sequence
NZ_ACFN01000155
49.2 KB
42 CDS

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whole genome shotgun sequence
NZ_ACFN01000156
16.8 KB
17 CDS

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whole genome shotgun sequence
NZ_ACFN01000157
2.2 KB
3 CDS

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whole genome shotgun sequence
NZ_ACFN01000158
9.8 KB
10 CDS

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whole genome shotgun sequence
NZ_ACFN01000159
7.5 KB
6 CDS

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whole genome shotgun sequence
NZ_ACFN01000160
9.2 KB
10 CDS

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whole genome shotgun sequence
NZ_ACFN01000161
5.2 KB
6 CDS

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whole genome shotgun sequence
NZ_ACFN01000162
5.1 KB
11 CDS

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whole genome shotgun sequence
NZ_ACFN01000163
52.2 KB
47 CDS

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whole genome shotgun sequence
NZ_ACFN01000164
11.7 KB
9 CDS

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Taxonomy

External Links

Vibrio parahaemolyticus AQ4037

Search Genome

Sequences

PubMed Search for Vibrio parahaemolyticus AQ4037

Related Genomes