Vibrio parahaemolyticus K5030

MSC

Genome Size: 5.0 megabases, GC Content: 45.3%, Released Date: March 31, 2009 #18535

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ACKB01000001
21.1 KB
22 CDS

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whole genome shotgun sequence
NZ_ACKB01000002
6.8 KB
9 CDS

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whole genome shotgun sequence
NZ_ACKB01000003
14.4 KB
12 CDS

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whole genome shotgun sequence
NZ_ACKB01000004
1.2 KB
2 CDS

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whole genome shotgun sequence
NZ_ACKB01000005
3.0 KB
3 CDS

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whole genome shotgun sequence
NZ_ACKB01000006
12.2 KB
13 CDS

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whole genome shotgun sequence
NZ_ACKB01000007
1.3 KB
5 CDS

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whole genome shotgun sequence
NZ_ACKB01000008
16.9 KB
18 CDS

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whole genome shotgun sequence
NZ_ACKB01000009
33.4 KB
33 CDS

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whole genome shotgun sequence
NZ_ACKB01000010
50.4 KB
42 CDS

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whole genome shotgun sequence
NZ_ACKB01000011
1.0 KB
2 CDS

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whole genome shotgun sequence
NZ_ACKB01000012
4.3 KB
4 CDS

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whole genome shotgun sequence
NZ_ACKB01000013
36.5 KB
29 CDS

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whole genome shotgun sequence
NZ_ACKB01000014
7.0 KB
9 CDS

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whole genome shotgun sequence
NZ_ACKB01000015
65.8 KB
58 CDS

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whole genome shotgun sequence
NZ_ACKB01000016
8.0 KB
10 CDS

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whole genome shotgun sequence
NZ_ACKB01000017
48.1 KB
44 CDS

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whole genome shotgun sequence
NZ_ACKB01000018
17.4 KB
17 CDS

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whole genome shotgun sequence
NZ_ACKB01000019
28.8 KB
26 CDS

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whole genome shotgun sequence
NZ_ACKB01000020
1.9 KB
2 CDS

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whole genome shotgun sequence
NZ_ACKB01000021
2.1 KB
3 CDS

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whole genome shotgun sequence
NZ_ACKB01000022
4.8 KB
4 CDS

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whole genome shotgun sequence
NZ_ACKB01000023
43.4 KB
39 CDS

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whole genome shotgun sequence
NZ_ACKB01000024
61.5 KB
56 CDS

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whole genome shotgun sequence
NZ_ACKB01000025
3.5 KB
3 CDS

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whole genome shotgun sequence
NZ_ACKB01000026
17.9 KB
18 CDS

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whole genome shotgun sequence
NZ_ACKB01000027
3.1 KB
3 CDS

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whole genome shotgun sequence
NZ_ACKB01000028
41.4 KB
39 CDS

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whole genome shotgun sequence
NZ_ACKB01000029
42.6 KB
58 CDS

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whole genome shotgun sequence
NZ_ACKB01000030
81.0 KB
80 CDS

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whole genome shotgun sequence
NZ_ACKB01000031
92.1 KB
92 CDS

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whole genome shotgun sequence
NZ_ACKB01000032
27.3 KB
25 CDS

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whole genome shotgun sequence
NZ_ACKB01000033
38.7 KB
27 CDS

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whole genome shotgun sequence
NZ_ACKB01000034
8.0 KB
9 CDS

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whole genome shotgun sequence
NZ_ACKB01000035
20.2 KB
19 CDS

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whole genome shotgun sequence
NZ_ACKB01000036
44.4 KB
35 CDS

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whole genome shotgun sequence
NZ_ACKB01000037
1.7 KB
0 CDS

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whole genome shotgun sequence
NZ_ACKB01000038
38.9 KB
39 CDS

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whole genome shotgun sequence
NZ_ACKB01000039
33.1 KB
30 CDS

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whole genome shotgun sequence
NZ_ACKB01000040
28.8 KB
31 CDS

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whole genome shotgun sequence
NZ_ACKB01000041
18.5 KB
18 CDS

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whole genome shotgun sequence
NZ_ACKB01000042
4.2 KB
4 CDS

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whole genome shotgun sequence
NZ_ACKB01000043
34.0 KB
27 CDS

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whole genome shotgun sequence
NZ_ACKB01000044
1.9 KB
3 CDS

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whole genome shotgun sequence
NZ_ACKB01000045
1.9 KB
3 CDS

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whole genome shotgun sequence
NZ_ACKB01000046
34.5 KB
32 CDS

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whole genome shotgun sequence
NZ_ACKB01000047
19.6 KB
18 CDS

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whole genome shotgun sequence
NZ_ACKB01000048
64.2 KB
51 CDS

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whole genome shotgun sequence
NZ_ACKB01000049
6.2 KB
9 CDS

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whole genome shotgun sequence
NZ_ACKB01000050
2.1 KB
3 CDS

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whole genome shotgun sequence
NZ_ACKB01000051
37.1 KB
32 CDS

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whole genome shotgun sequence
NZ_ACKB01000052
5.9 KB
4 CDS

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whole genome shotgun sequence
NZ_ACKB01000053
11.1 KB
8 CDS

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whole genome shotgun sequence
NZ_ACKB01000054
641.7 KB
604 CDS

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whole genome shotgun sequence
NZ_ACKB01000055
32.6 KB
31 CDS

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whole genome shotgun sequence
NZ_ACKB01000056
86.4 KB
74 CDS

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whole genome shotgun sequence
NZ_ACKB01000057
5.1 KB
5 CDS

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whole genome shotgun sequence
NZ_ACKB01000058
4.1 KB
5 CDS

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whole genome shotgun sequence
NZ_ACKB01000059
3.3 KB
4 CDS

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whole genome shotgun sequence
NZ_ACKB01000060
1.2 KB
1 CDS

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whole genome shotgun sequence
NZ_ACKB01000061
22.3 KB
8 CDS

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whole genome shotgun sequence
NZ_ACKB01000062
14.2 KB
13 CDS

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whole genome shotgun sequence
NZ_ACKB01000063
9.1 KB
5 CDS

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whole genome shotgun sequence
NZ_ACKB01000064
13.7 KB
13 CDS

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whole genome shotgun sequence
NZ_ACKB01000065
23.3 KB
21 CDS

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whole genome shotgun sequence
NZ_ACKB01000066
64.6 KB
56 CDS

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whole genome shotgun sequence
NZ_ACKB01000067
1.0 KB
2 CDS

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whole genome shotgun sequence
NZ_ACKB01000068
15.3 KB
15 CDS

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whole genome shotgun sequence
NZ_ACKB01000069
1.3 KB
2 CDS

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whole genome shotgun sequence
NZ_ACKB01000070
11.3 KB
12 CDS

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whole genome shotgun sequence
NZ_ACKB01000071
29.6 KB
26 CDS

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whole genome shotgun sequence
NZ_ACKB01000072
4.0 KB
0 CDS

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whole genome shotgun sequence
NZ_ACKB01000073
1.2 KB
2 CDS

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whole genome shotgun sequence
NZ_ACKB01000074
1.9 KB
4 CDS

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whole genome shotgun sequence
NZ_ACKB01000075
18.8 KB
15 CDS

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whole genome shotgun sequence
NZ_ACKB01000076
28.4 KB
27 CDS

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whole genome shotgun sequence
NZ_ACKB01000077
22.0 KB
21 CDS

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whole genome shotgun sequence
NZ_ACKB01000078
17.1 KB
12 CDS

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whole genome shotgun sequence
NZ_ACKB01000079
1.7 KB
3 CDS

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whole genome shotgun sequence
NZ_ACKB01000080
3.4 KB
3 CDS

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whole genome shotgun sequence
NZ_ACKB01000081
1.1 KB
3 CDS

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whole genome shotgun sequence
NZ_ACKB01000082
2.7 KB
3 CDS

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whole genome shotgun sequence
NZ_ACKB01000083
78.0 KB
65 CDS

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whole genome shotgun sequence
NZ_ACKB01000084
8.2 KB
7 CDS

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whole genome shotgun sequence
NZ_ACKB01000085
37.0 KB
34 CDS

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whole genome shotgun sequence
NZ_ACKB01000086
3.8 KB
9 CDS

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whole genome shotgun sequence
NZ_ACKB01000087
14.6 KB
13 CDS

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whole genome shotgun sequence
NZ_ACKB01000088
39.8 KB
38 CDS

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whole genome shotgun sequence
NZ_ACKB01000089
5.8 KB
6 CDS

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whole genome shotgun sequence
NZ_ACKB01000090
4.2 KB
0 CDS

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whole genome shotgun sequence
NZ_ACKB01000091
41.0 KB
30 CDS

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whole genome shotgun sequence
NZ_ACKB01000092
7.4 KB
5 CDS

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whole genome shotgun sequence
NZ_ACKB01000093
11.1 KB
12 CDS

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whole genome shotgun sequence
NZ_ACKB01000094
65.8 KB
60 CDS

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whole genome shotgun sequence
NZ_ACKB01000095
9.9 KB
10 CDS

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whole genome shotgun sequence
NZ_ACKB01000096
1.5 KB
1 CDS

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whole genome shotgun sequence
NZ_ACKB01000097
1.9 KB
5 CDS

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whole genome shotgun sequence
NZ_ACKB01000098
51.9 KB
45 CDS

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whole genome shotgun sequence
NZ_ACKB01000099
12.0 KB
9 CDS

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whole genome shotgun sequence
NZ_ACKB01000100
74.3 KB
64 CDS

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whole genome shotgun sequence
NZ_ACKB01000101
1.6 KB
3 CDS

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whole genome shotgun sequence
NZ_ACKB01000102
8.9 KB
11 CDS

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whole genome shotgun sequence
NZ_ACKB01000103
3.9 KB
6 CDS

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whole genome shotgun sequence
NZ_ACKB01000104
2.5 KB
2 CDS

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whole genome shotgun sequence
NZ_ACKB01000105
39.9 KB
40 CDS

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whole genome shotgun sequence
NZ_ACKB01000106
1014 bytes
2 CDS

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whole genome shotgun sequence
NZ_ACKB01000107
1.6 KB
2 CDS

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whole genome shotgun sequence
NZ_ACKB01000108
37.5 KB
35 CDS

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whole genome shotgun sequence
NZ_ACKB01000109
1.1 KB
2 CDS

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whole genome shotgun sequence
NZ_ACKB01000110
1.1 KB
2 CDS

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whole genome shotgun sequence
NZ_ACKB01000111
4.6 KB
5 CDS

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whole genome shotgun sequence
NZ_ACKB01000112
39.6 KB
42 CDS

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whole genome shotgun sequence
NZ_ACKB01000113
33.4 KB
29 CDS

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whole genome shotgun sequence
NZ_ACKB01000114
7.5 KB
7 CDS

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whole genome shotgun sequence
NZ_ACKB01000115
1.4 KB
3 CDS

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whole genome shotgun sequence
NZ_ACKB01000116
45.1 KB
44 CDS

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whole genome shotgun sequence
NZ_ACKB01000117
36.9 KB
33 CDS

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whole genome shotgun sequence
NZ_ACKB01000118
1.8 KB
3 CDS

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whole genome shotgun sequence
NZ_ACKB01000119
20.3 KB
16 CDS

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whole genome shotgun sequence
NZ_ACKB01000120
4.6 KB
5 CDS

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whole genome shotgun sequence
NZ_ACKB01000121
60.2 KB
59 CDS

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whole genome shotgun sequence
NZ_ACKB01000122
1.8 KB
3 CDS

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whole genome shotgun sequence
NZ_ACKB01000123
50.7 KB
47 CDS

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whole genome shotgun sequence
NZ_ACKB01000124
31.0 KB
28 CDS

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whole genome shotgun sequence
NZ_ACKB01000125
30.7 KB
28 CDS

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whole genome shotgun sequence
NZ_ACKB01000126
44.2 KB
38 CDS

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whole genome shotgun sequence
NZ_ACKB01000127
244.7 KB
264 CDS

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whole genome shotgun sequence
NZ_ACKB01000128
14.3 KB
15 CDS

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whole genome shotgun sequence
NZ_ACKB01000129
31.1 KB
28 CDS

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whole genome shotgun sequence
NZ_ACKB01000130
3.9 KB
0 CDS

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whole genome shotgun sequence
NZ_ACKB01000131
95.5 KB
97 CDS

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whole genome shotgun sequence
NZ_ACKB01000132
21.4 KB
18 CDS

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whole genome shotgun sequence
NZ_ACKB01000133
9.3 KB
8 CDS

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whole genome shotgun sequence
NZ_ACKB01000134
3.8 KB
4 CDS

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whole genome shotgun sequence
NZ_ACKB01000135
4.8 KB
4 CDS

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whole genome shotgun sequence
NZ_ACKB01000136
21.3 KB
15 CDS

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whole genome shotgun sequence
NZ_ACKB01000137
15.6 KB
25 CDS

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whole genome shotgun sequence
NZ_ACKB01000138
2.0 KB
3 CDS

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whole genome shotgun sequence
NZ_ACKB01000139
217.0 KB
178 CDS

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whole genome shotgun sequence
NZ_ACKB01000140
1.8 KB
3 CDS

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whole genome shotgun sequence
NZ_ACKB01000141
2.7 KB
3 CDS

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whole genome shotgun sequence
NZ_ACKB01000142
21.7 KB
19 CDS

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whole genome shotgun sequence
NZ_ACKB01000143
45.5 KB
45 CDS

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whole genome shotgun sequence
NZ_ACKB01000144
46.0 KB
42 CDS

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whole genome shotgun sequence
NZ_ACKB01000145
129.9 KB
127 CDS

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whole genome shotgun sequence
NZ_ACKB01000146
80.7 KB
77 CDS

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whole genome shotgun sequence
NZ_ACKB01000147
9.2 KB
9 CDS

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whole genome shotgun sequence
NZ_ACKB01000148
10.1 KB
9 CDS

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whole genome shotgun sequence
NZ_ACKB01000149
14.0 KB
16 CDS

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whole genome shotgun sequence
NZ_ACKB01000150
36.0 KB
33 CDS

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whole genome shotgun sequence
NZ_ACKB01000151
16.7 KB
13 CDS

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whole genome shotgun sequence
NZ_ACKB01000152
1.1 KB
3 CDS

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whole genome shotgun sequence
NZ_ACKB01000153
2.4 KB
4 CDS

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whole genome shotgun sequence
NZ_ACKB01000154
2.5 KB
4 CDS

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whole genome shotgun sequence
NZ_ACKB01000155
2.5 KB
4 CDS

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whole genome shotgun sequence
NZ_ACKB01000156
14.8 KB
14 CDS

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whole genome shotgun sequence
NZ_ACKB01000157
182.3 KB
167 CDS

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whole genome shotgun sequence
NZ_ACKB01000158
26.7 KB
29 CDS

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whole genome shotgun sequence
NZ_ACKB01000159
6.4 KB
5 CDS

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whole genome shotgun sequence
NZ_ACKB01000160
31.8 KB
26 CDS

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whole genome shotgun sequence
NZ_ACKB01000161
30.7 KB
20 CDS

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whole genome shotgun sequence
NZ_ACKB01000162
1.9 KB
3 CDS

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whole genome shotgun sequence
NZ_ACKB01000163
4.7 KB
8 CDS

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whole genome shotgun sequence
NZ_ACKB01000164
185.1 KB
154 CDS

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Taxonomy

External Links

Vibrio parahaemolyticus K5030

Search Genome

Sequences

PubMed Search for Vibrio parahaemolyticus K5030

Related Genomes