Vibrio parahaemolyticus RIMD 2210633

Osaka Univ.

Genome Size: 5.17 megabases, GC Content: 45.4%, Released Date: June 2, 2000 #17614

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

chromosome I
NC_004603
3.1 MB
3080 CDS

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chromosome II
NC_004605
1.8 MB
1752 CDS

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References

A filamentous phage associated with recent pandemic Vibrio parahaemolyticus O3:K6 strains
Nasu,H., Iida,T., Sugahara,T., Yamaichi,Y., Park,K.S., Yokoyama,K., Makino,K., Shinagawa,H. and Honda,T. J. Clin. Microbiol. 38 (6), 2156-2161 (2000)
PubMed, PubGet, HubMed
Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V cholerae
Makino,K., Oshima,K., Kurokawa,K., Yokoyama,K., Uda,T., Tagomori,K., Iijima,Y., Najima,M., Nakano,M., Yamashita,A., Kubota,Y., Kimura,S., Yasunaga,T., Honda,T., Shinagawa,H., Hattori,M. and Iida,T. Lancet 361 (9359), 743-749 (2003)
PubMed, PubGet, HubMed

Taxonomy

External Links

Vibrio parahaemolyticus RIMD 2210633

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Sequences

References

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