Vibrio sp. MED222

J. Craig Venter Institute

Genome Size: 5.0 megabases, GC Content: 44.0%, Released Date: Jan. 27, 2006 #18539

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_AAND01000001
971.6 KB
852 CDS

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whole genome shotgun sequence
NZ_AAND01000002
228.1 KB
461 CDS

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whole genome shotgun sequence
NZ_AAND01000003
163.9 KB
138 CDS

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whole genome shotgun sequence
NZ_AAND01000004
141.7 KB
130 CDS

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whole genome shotgun sequence
NZ_AAND01000005
133.9 KB
112 CDS

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whole genome shotgun sequence
NZ_AAND01000006
126.1 KB
136 CDS

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whole genome shotgun sequence
NZ_AAND01000007
125.2 KB
120 CDS

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whole genome shotgun sequence
NZ_AAND01000008
124.8 KB
114 CDS

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whole genome shotgun sequence
NZ_AAND01000009
123.8 KB
116 CDS

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whole genome shotgun sequence
NZ_AAND01000010
119.9 KB
98 CDS

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whole genome shotgun sequence
NZ_AAND01000011
116.8 KB
106 CDS

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whole genome shotgun sequence
NZ_AAND01000012
113.1 KB
102 CDS

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whole genome shotgun sequence
NZ_AAND01000013
102.1 KB
93 CDS

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whole genome shotgun sequence
NZ_AAND01000014
101.1 KB
103 CDS

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whole genome shotgun sequence
NZ_AAND01000015
99.1 KB
97 CDS

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whole genome shotgun sequence
NZ_AAND01000016
88.2 KB
86 CDS

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whole genome shotgun sequence
NZ_AAND01000017
88.1 KB
93 CDS

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whole genome shotgun sequence
NZ_AAND01000018
76.2 KB
74 CDS

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whole genome shotgun sequence
NZ_AAND01000019
76.0 KB
74 CDS

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whole genome shotgun sequence
NZ_AAND01000020
74.8 KB
61 CDS

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whole genome shotgun sequence
NZ_AAND01000021
74.4 KB
72 CDS

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whole genome shotgun sequence
NZ_AAND01000022
72.3 KB
51 CDS

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whole genome shotgun sequence
NZ_AAND01000023
71.4 KB
76 CDS

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whole genome shotgun sequence
NZ_AAND01000024
67.7 KB
50 CDS

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whole genome shotgun sequence
NZ_AAND01000025
66.5 KB
78 CDS

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whole genome shotgun sequence
NZ_AAND01000026
63.5 KB
63 CDS

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whole genome shotgun sequence
NZ_AAND01000027
63.1 KB
46 CDS

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whole genome shotgun sequence
NZ_AAND01000028
61.6 KB
52 CDS

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whole genome shotgun sequence
NZ_AAND01000029
55.5 KB
48 CDS

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whole genome shotgun sequence
NZ_AAND01000030
55.2 KB
51 CDS

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whole genome shotgun sequence
NZ_AAND01000031
46.6 KB
38 CDS

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whole genome shotgun sequence
NZ_AAND01000032
41.6 KB
33 CDS

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whole genome shotgun sequence
NZ_AAND01000033
41.4 KB
38 CDS

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whole genome shotgun sequence
NZ_AAND01000034
41.1 KB
30 CDS

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whole genome shotgun sequence
NZ_AAND01000035
40.7 KB
38 CDS

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whole genome shotgun sequence
NZ_AAND01000036
39.8 KB
37 CDS

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whole genome shotgun sequence
NZ_AAND01000037
39.7 KB
35 CDS

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whole genome shotgun sequence
NZ_AAND01000038
39.3 KB
34 CDS

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whole genome shotgun sequence
NZ_AAND01000039
37.7 KB
34 CDS

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whole genome shotgun sequence
NZ_AAND01000040
35.6 KB
36 CDS

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whole genome shotgun sequence
NZ_AAND01000041
34.4 KB
31 CDS

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whole genome shotgun sequence
NZ_AAND01000042
31.3 KB
27 CDS

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whole genome shotgun sequence
NZ_AAND01000043
30.6 KB
28 CDS

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whole genome shotgun sequence
NZ_AAND01000044
28.1 KB
27 CDS

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whole genome shotgun sequence
NZ_AAND01000045
23.4 KB
20 CDS

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whole genome shotgun sequence
NZ_AAND01000046
23.4 KB
23 CDS

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whole genome shotgun sequence
NZ_AAND01000047
22.2 KB
18 CDS

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whole genome shotgun sequence
NZ_AAND01000048
21.3 KB
17 CDS

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whole genome shotgun sequence
NZ_AAND01000049
21.1 KB
18 CDS

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whole genome shotgun sequence
NZ_AAND01000050
19.3 KB
18 CDS

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whole genome shotgun sequence
NZ_AAND01000051
18.7 KB
15 CDS

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whole genome shotgun sequence
NZ_AAND01000052
17.8 KB
20 CDS

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whole genome shotgun sequence
NZ_AAND01000053
15.9 KB
16 CDS

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whole genome shotgun sequence
NZ_AAND01000054
15.2 KB
16 CDS

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whole genome shotgun sequence
NZ_AAND01000055
14.1 KB
10 CDS

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whole genome shotgun sequence
NZ_AAND01000056
12.7 KB
14 CDS

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whole genome shotgun sequence
NZ_AAND01000057
11.6 KB
8 CDS

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whole genome shotgun sequence
NZ_AAND01000058
11.4 KB
10 CDS

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whole genome shotgun sequence
NZ_AAND01000059
10.5 KB
7 CDS

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whole genome shotgun sequence
NZ_AAND01000060
10.5 KB
6 CDS

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whole genome shotgun sequence
NZ_AAND01000061
10.2 KB
10 CDS

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whole genome shotgun sequence
NZ_AAND01000062
10.2 KB
7 CDS

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whole genome shotgun sequence
NZ_AAND01000063
9.7 KB
11 CDS

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whole genome shotgun sequence
NZ_AAND01000064
9.3 KB
7 CDS

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whole genome shotgun sequence
NZ_AAND01000065
9.2 KB
10 CDS

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whole genome shotgun sequence
NZ_AAND01000066
7.2 KB
17 CDS

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whole genome shotgun sequence
NZ_AAND01000067
6.5 KB
7 CDS

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whole genome shotgun sequence
NZ_AAND01000068
5.6 KB
4 CDS

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whole genome shotgun sequence
NZ_AAND01000069
4.8 KB
2 CDS

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whole genome shotgun sequence
NZ_AAND01000070
3.9 KB
3 CDS

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whole genome shotgun sequence
NZ_AAND01000071
3.8 KB
4 CDS

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whole genome shotgun sequence
NZ_AAND01000072
3.3 KB
4 CDS

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whole genome shotgun sequence
NZ_AAND01000073
3.2 KB
3 CDS

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whole genome shotgun sequence
NZ_AAND01000074
3.2 KB
2 CDS

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whole genome shotgun sequence
NZ_AAND01000075
2.7 KB
4 CDS

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whole genome shotgun sequence
NZ_AAND01000076
2.6 KB
3 CDS

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whole genome shotgun sequence
NZ_AAND01000077
2.4 KB
1 CDS

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whole genome shotgun sequence
NZ_AAND01000078
2.4 KB
2 CDS

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whole genome shotgun sequence
NZ_AAND01000079
2.3 KB
2 CDS

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whole genome shotgun sequence
NZ_AAND01000080
2.3 KB
2 CDS

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whole genome shotgun sequence
NZ_AAND01000081
2.0 KB
5 CDS

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whole genome shotgun sequence
NZ_AAND01000082
2.0 KB
2 CDS

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whole genome shotgun sequence
NZ_AAND01000083
1.9 KB
0 CDS

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whole genome shotgun sequence
NZ_AAND01000084
1.9 KB
3 CDS

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whole genome shotgun sequence
NZ_AAND01000085
1.9 KB
2 CDS

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whole genome shotgun sequence
NZ_AAND01000086
1.9 KB
0 CDS

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whole genome shotgun sequence
NZ_AAND01000087
1.8 KB
3 CDS

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whole genome shotgun sequence
NZ_AAND01000088
1.7 KB
5 CDS

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whole genome shotgun sequence
NZ_AAND01000089
1.6 KB
0 CDS

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whole genome shotgun sequence
NZ_AAND01000090
1.6 KB
1 CDS

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whole genome shotgun sequence
NZ_AAND01000091
1.5 KB
1 CDS

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whole genome shotgun sequence
NZ_AAND01000092
1.5 KB
0 CDS

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whole genome shotgun sequence
NZ_AAND01000093
1.4 KB
0 CDS

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whole genome shotgun sequence
NZ_AAND01000094
1.3 KB
0 CDS

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whole genome shotgun sequence
NZ_AAND01000095
1.2 KB
2 CDS

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whole genome shotgun sequence
NZ_AAND01000096
1.1 KB
2 CDS

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whole genome shotgun sequence
NZ_AAND01000097
1.1 KB
1 CDS

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whole genome shotgun sequence
NZ_AAND01000098
1.1 KB
1 CDS

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whole genome shotgun sequence
NZ_AAND01000099
1.0 KB
2 CDS

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Taxonomy

External Links

Vibrio sp. MED222

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Sequences

PubMed Search for Vibrio sp. MED222

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