Vibrio sp. RC586

National Microbial Pathogen Data Resource (NMPDR) team

Genome Size: 4.1 megabases, GC Content: 46.5%, Released Date: Nov. 3, 2009 #20771

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ADBD01000001
2.6 KB
0 CDS

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whole genome shotgun sequence
NZ_ADBD01000002
2.5 KB
2 CDS

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whole genome shotgun sequence
NZ_ADBD01000003
127.3 KB
102 CDS

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whole genome shotgun sequence
NZ_ADBD01000004
216.9 KB
194 CDS

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whole genome shotgun sequence
NZ_ADBD01000005
255.4 KB
249 CDS

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whole genome shotgun sequence
NZ_ADBD01000006
73.5 KB
75 CDS

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whole genome shotgun sequence
NZ_ADBD01000007
889.3 KB
785 CDS

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whole genome shotgun sequence
NZ_ADBD01000008
601.2 KB
496 CDS

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whole genome shotgun sequence
NZ_ADBD01000009
13.9 KB
9 CDS

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whole genome shotgun sequence
NZ_ADBD01000010
501.3 KB
477 CDS

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whole genome shotgun sequence
NZ_ADBD01000011
62.7 KB
63 CDS

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whole genome shotgun sequence
NZ_ADBD01000012
14.5 KB
10 CDS

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whole genome shotgun sequence
NZ_ADBD01000013
964.4 KB
843 CDS

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whole genome shotgun sequence
NZ_ADBD01000014
115.5 KB
103 CDS

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whole genome shotgun sequence
NZ_ADBD01000015
16.0 KB
13 CDS

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whole genome shotgun sequence
NZ_ADBD01000016
129.8 KB
112 CDS

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Taxonomy

External Links

Vibrio sp. RC586

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Sequences

PubMed Search for Vibrio sp. RC586

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