Vibrio vulnificus YJ016

NHRI, China

Genome Size: 5.26 megabases, GC Content: 46.7%, Released Date: Dec. 6, 2003 #17618

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

chromosome I
NC_005139
3.2 MB
3259 CDS

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chromosome II
NC_005140
1.8 MB
1696 CDS

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plasmid pYJ016
NC_005128
47.4 KB
69 CDS

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References

Comparative genome analysis of Vibrio vulnificus, a marine pathogen
Chen,C.Y., Wu,K.M., Chang,Y.C., Chang,C.H., Tsai,H.C., Liao,T.L., Liu,Y.M., Chen,H.J., Shen,A.B., Li,J.C., Su,T.L., Shao,C.P., Lee,C.T., Hor,L.I. and Tsai,S.F. Genome Res. 13 (12), 2577-2587 (2003)
PubMed, PubGet, HubMed

Taxonomy

External Links

Vibrio vulnificus YJ016

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Sequences

References

Related Genomes