Waddlia chondrophila WSU 86-1044

Institute of Microbiology, University Hospital Center and University of Lausanne, Switzerland

Genome Size: 2.116 megabases, Released Date: June 3, 2010 #20086

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
CP001928
2.0 MB
1934 CDS

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Circular View
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plasmid pWc
CP001929
15.2 KB
22 CDS

Table view
Circular View
Artemis Viewer

References

The Waddlia genome: a window into chlamydial biology
Bertelli,C., Collyn,F., Croxatto,A., Ruckert,C., Polkinghorne,A., Kebbi-Beghdadi,C., Goesmann,A., Vaughan,L. and Greub,G. PLoS ONE 5 (5), E10890 (2010)
PubMed, PubGet, HubMed

Taxonomy

External Links

Waddlia chondrophila WSU 86-1044

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Sequences

References

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