Xanthomonas albilineans

NCBI

Genome Size: 3.8 megabases, Released Date: Jan. 7, 2010 #17673

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

str. GPE PC73, chromosome, complete genome
FP565176
3.6 MB
3114 CDS

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References

The complete genome sequence of Xanthomonas albilineans provides new insights into the reductive genome evolution of the xylem-limited Xanthomonadaceae
Pieretti,I., Royer,M., Barbe,V., Carrere,S., Koebnik,R., Cociancich,S., Couloux,A., Darrasse,A., Gouzy,J., Jacques,M.A., Lauber,E., Manceau,C., Mangenot,S., Poussier,S., Segurens,B., Szurek,B., Verdier,V., Arlat,M. and Rott,P. BMC Genomics 10 (1), 616 (2009)
PubMed, PubGet, HubMed

Taxonomy

External Links

Xanthomonas albilineans

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Sequences

References

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