Xanthomonas oryzae pv. oryzae PXO99A

Center for Bioinformatics and Computational Biology

Genome Size: 5.2 megabases, GC Content: 63.6%, Released Date: May 16, 2008 #17633

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_010717
5.0 MB
4988 CDS

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Artemis Viewer

References

Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A
Salzberg,S.L., Sommer,D.D., Schatz,M.C., Phillippy,A.M., Rabinowicz,P.D., Tsuge,S., Furutani,A., Ochiai,H., Delcher,A.L., Kelley,D., Madupu,R., Puiu,D., Radune,D., Shumway,M., Trapnell,C., Aparna,G., Jha,G., Pandey,A., Patil,P.B., Ishihara,H., Meyer,D.F., Szurek,B., Verdier,V., Koebnik,R., Dow,J.M., Ryan,R.P., Hirata,H., Tsuyumu,S., Won Lee,S., Seo,Y.S., Sriariyanum,M., Ronald,P.C., Sonti,R.V., Van Sluys,M.A., Leach,J.E., White,F.F. and Bogdanove,A.J. BMC Genomics 9, 204 (2008)
PubMed, PubGet, HubMed

Taxonomy

External Links

Xanthomonas oryzae pv. oryzae PXO99A

Search Genome

Sequences

References

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