Yersinia pestis biovar Antiqua str. B42003004

TIGR

GC Content: 47.7%, Released Date: March 26, 2007 #18564

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_AAYU01000001
882.6 KB
813 CDS

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whole genome shotgun sequence
NZ_AAYU01000002
648.1 KB
596 CDS

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whole genome shotgun sequence
NZ_AAYU01000003
495.6 KB
429 CDS

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whole genome shotgun sequence
NZ_AAYU01000004
425.3 KB
386 CDS

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whole genome shotgun sequence
NZ_AAYU01000005
324.0 KB
253 CDS

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whole genome shotgun sequence
NZ_AAYU01000006
276.5 KB
252 CDS

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whole genome shotgun sequence
NZ_AAYU01000007
241.6 KB
237 CDS

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whole genome shotgun sequence
NZ_AAYU01000008
167.3 KB
120 CDS

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whole genome shotgun sequence
NZ_AAYU01000009
159.0 KB
148 CDS

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whole genome shotgun sequence
NZ_AAYU01000010
135.8 KB
123 CDS

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whole genome shotgun sequence
NZ_AAYU01000011
117.2 KB
105 CDS

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whole genome shotgun sequence
NZ_AAYU01000012
107.4 KB
94 CDS

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whole genome shotgun sequence
NZ_AAYU01000013
92.6 KB
86 CDS

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whole genome shotgun sequence
NZ_AAYU01000014
86.4 KB
78 CDS

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whole genome shotgun sequence
NZ_AAYU01000015
71.0 KB
66 CDS

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whole genome shotgun sequence
NZ_AAYU01000016
67.0 KB
65 CDS

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whole genome shotgun sequence
NZ_AAYU01000017
61.5 KB
59 CDS

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whole genome shotgun sequence
NZ_AAYU01000018
45.4 KB
44 CDS

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whole genome shotgun sequence
NZ_AAYU01000019
32.5 KB
27 CDS

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whole genome shotgun sequence
NZ_AAYU01000020
30.2 KB
27 CDS

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whole genome shotgun sequence
NZ_AAYU01000021
24.5 KB
29 CDS

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whole genome shotgun sequence
NZ_AAYU01000022
20.1 KB
26 CDS

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whole genome shotgun sequence
NZ_AAYU01000023
19.4 KB
19 CDS

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whole genome shotgun sequence
NZ_AAYU01000024
19.2 KB
20 CDS

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whole genome shotgun sequence
NZ_AAYU01000025
13.8 KB
20 CDS

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whole genome shotgun sequence
NZ_AAYU01000026
13.5 KB
15 CDS

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whole genome shotgun sequence
NZ_AAYU01000027
13.4 KB
17 CDS

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whole genome shotgun sequence
NZ_AAYU01000028
12.1 KB
11 CDS

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whole genome shotgun sequence
NZ_AAYU01000029
10.3 KB
8 CDS

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whole genome shotgun sequence
NZ_AAYU01000030
10.0 KB
9 CDS

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whole genome shotgun sequence
NZ_AAYU01000031
8.6 KB
7 CDS

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whole genome shotgun sequence
NZ_AAYU01000032
8.4 KB
8 CDS

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whole genome shotgun sequence
NZ_AAYU01000033
7.4 KB
9 CDS

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whole genome shotgun sequence
NZ_AAYU01000034
7.4 KB
6 CDS

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whole genome shotgun sequence
NZ_AAYU01000035
7.1 KB
6 CDS

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whole genome shotgun sequence
NZ_AAYU01000036
6.7 KB
4 CDS

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whole genome shotgun sequence
NZ_AAYU01000037
4.8 KB
7 CDS

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whole genome shotgun sequence
NZ_AAYU01000038
4.5 KB
1 CDS

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whole genome shotgun sequence
NZ_AAYU01000039
3.7 KB
3 CDS

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whole genome shotgun sequence
NZ_AAYU01000040
3.4 KB
2 CDS

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whole genome shotgun sequence
NZ_AAYU01000041
3.2 KB
0 CDS

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whole genome shotgun sequence
NZ_AAYU01000042
2.8 KB
1 CDS

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whole genome shotgun sequence
NZ_AAYU01000043
2.8 KB
0 CDS

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whole genome shotgun sequence
NZ_AAYU01000044
2.2 KB
2 CDS

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whole genome shotgun sequence
NZ_AAYU01000045
2.1 KB
2 CDS

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whole genome shotgun sequence
NZ_AAYU01000046
2.0 KB
1 CDS

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whole genome shotgun sequence
NZ_AAYU01000047
1.9 KB
2 CDS

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whole genome shotgun sequence
NZ_AAYU01000048
1.9 KB
0 CDS

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whole genome shotgun sequence
NZ_AAYU01000049
1.7 KB
1 CDS

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whole genome shotgun sequence
NZ_AAYU01000050
1.5 KB
1 CDS

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whole genome shotgun sequence
NZ_AAYU01000051
1.3 KB
3 CDS

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whole genome shotgun sequence
NZ_AAYU01000052
1.3 KB
0 CDS

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whole genome shotgun sequence
NZ_AAYU01000053
1.3 KB
0 CDS

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whole genome shotgun sequence
NZ_AAYU01000054
1.3 KB
0 CDS

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whole genome shotgun sequence
NZ_AAYU01000055
1.2 KB
2 CDS

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whole genome shotgun sequence
NZ_AAYU01000056
1.2 KB
0 CDS

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whole genome shotgun sequence
NZ_AAYU01000057
1.1 KB
0 CDS

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whole genome shotgun sequence
NZ_AAYU01000058
1.1 KB
1 CDS

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whole genome shotgun sequence
NZ_AAYU01000059
1.1 KB
0 CDS

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whole genome shotgun sequence
NZ_AAYU01000060
1.1 KB
1 CDS

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whole genome shotgun sequence
NZ_AAYU01000061
1.1 KB
0 CDS

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whole genome shotgun sequence
NZ_AAYU01000062
1.1 KB
1 CDS

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whole genome shotgun sequence
NZ_AAYU01000063
996 bytes
0 CDS

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whole genome shotgun sequence
NZ_AAYU01000064
976 bytes
0 CDS

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whole genome shotgun sequence
NZ_AAYU01000065
966 bytes
0 CDS

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whole genome shotgun sequence
NZ_AAYU01000066
922 bytes
2 CDS

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whole genome shotgun sequence
NZ_AAYU01000067
896 bytes
0 CDS

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whole genome shotgun sequence
NZ_AAYU01000068
895 bytes
1 CDS

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whole genome shotgun sequence
NZ_AAYU01000069
873 bytes
0 CDS

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References

Draft genome sequences of Yersinia pestis isolates from natural foci of endemic plague in China
Eppinger,M., Guo,Z., Sebastian,Y., Song,Y., Lindler,L.E., Yang,R. and Ravel,J. J. Bacteriol. 191 (24), 7628-7629 (2009)
PubMed, PubGet, HubMed

Taxonomy

External Links

Yersinia pestis biovar Antiqua str. B42003004

Search Genome

Sequences

References

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