Yersinia pestis biovar Antiqua str. E1979001

TIGR

GC Content: 47.7%, Released Date: March 26, 2007 #18565

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_AAYV01000001
679.6 KB
621 CDS

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whole genome shotgun sequence
NZ_AAYV01000002
528.1 KB
422 CDS

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whole genome shotgun sequence
NZ_AAYV01000003
388.2 KB
362 CDS

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whole genome shotgun sequence
NZ_AAYV01000004
335.8 KB
271 CDS

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whole genome shotgun sequence
NZ_AAYV01000005
270.8 KB
255 CDS

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whole genome shotgun sequence
NZ_AAYV01000006
251.9 KB
234 CDS

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whole genome shotgun sequence
NZ_AAYV01000007
219.7 KB
187 CDS

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whole genome shotgun sequence
NZ_AAYV01000008
209.7 KB
209 CDS

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whole genome shotgun sequence
NZ_AAYV01000009
209.2 KB
179 CDS

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whole genome shotgun sequence
NZ_AAYV01000010
189.2 KB
179 CDS

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whole genome shotgun sequence
NZ_AAYV01000011
183.0 KB
165 CDS

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whole genome shotgun sequence
NZ_AAYV01000012
174.4 KB
157 CDS

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whole genome shotgun sequence
NZ_AAYV01000013
150.4 KB
137 CDS

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whole genome shotgun sequence
NZ_AAYV01000014
111.6 KB
101 CDS

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whole genome shotgun sequence
NZ_AAYV01000015
103.9 KB
97 CDS

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whole genome shotgun sequence
NZ_AAYV01000016
85.5 KB
82 CDS

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whole genome shotgun sequence
NZ_AAYV01000017
68.6 KB
80 CDS

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whole genome shotgun sequence
NZ_AAYV01000018
62.8 KB
62 CDS

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whole genome shotgun sequence
NZ_AAYV01000019
51.1 KB
44 CDS

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whole genome shotgun sequence
NZ_AAYV01000020
50.7 KB
49 CDS

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whole genome shotgun sequence
NZ_AAYV01000021
50.4 KB
50 CDS

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whole genome shotgun sequence
NZ_AAYV01000022
36.5 KB
33 CDS

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whole genome shotgun sequence
NZ_AAYV01000023
31.3 KB
15 CDS

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whole genome shotgun sequence
NZ_AAYV01000024
30.3 KB
26 CDS

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whole genome shotgun sequence
NZ_AAYV01000025
28.1 KB
35 CDS

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whole genome shotgun sequence
NZ_AAYV01000026
27.4 KB
20 CDS

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whole genome shotgun sequence
NZ_AAYV01000027
26.4 KB
19 CDS

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whole genome shotgun sequence
NZ_AAYV01000028
24.1 KB
20 CDS

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whole genome shotgun sequence
NZ_AAYV01000029
23.8 KB
15 CDS

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whole genome shotgun sequence
NZ_AAYV01000030
22.0 KB
17 CDS

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whole genome shotgun sequence
NZ_AAYV01000031
9.1 KB
12 CDS

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whole genome shotgun sequence
NZ_AAYV01000032
9.0 KB
10 CDS

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whole genome shotgun sequence
NZ_AAYV01000033
7.9 KB
7 CDS

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whole genome shotgun sequence
NZ_AAYV01000034
7.9 KB
6 CDS

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whole genome shotgun sequence
NZ_AAYV01000035
7.6 KB
10 CDS

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whole genome shotgun sequence
NZ_AAYV01000036
6.6 KB
8 CDS

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whole genome shotgun sequence
NZ_AAYV01000037
6.6 KB
4 CDS

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whole genome shotgun sequence
NZ_AAYV01000038
3.5 KB
0 CDS

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whole genome shotgun sequence
NZ_AAYV01000039
3.2 KB
0 CDS

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whole genome shotgun sequence
NZ_AAYV01000040
2.5 KB
1 CDS

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whole genome shotgun sequence
NZ_AAYV01000041
2.0 KB
1 CDS

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whole genome shotgun sequence
NZ_AAYV01000042
2.0 KB
0 CDS

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whole genome shotgun sequence
NZ_AAYV01000043
2.0 KB
0 CDS

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whole genome shotgun sequence
NZ_AAYV01000044
1.9 KB
1 CDS

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whole genome shotgun sequence
NZ_AAYV01000045
1.9 KB
2 CDS

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whole genome shotgun sequence
NZ_AAYV01000046
1.9 KB
0 CDS

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whole genome shotgun sequence
NZ_AAYV01000047
1.8 KB
0 CDS

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whole genome shotgun sequence
NZ_AAYV01000048
1.8 KB
1 CDS

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whole genome shotgun sequence
NZ_AAYV01000049
1.6 KB
1 CDS

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whole genome shotgun sequence
NZ_AAYV01000050
1.6 KB
0 CDS

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whole genome shotgun sequence
NZ_AAYV01000051
1.6 KB
0 CDS

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whole genome shotgun sequence
NZ_AAYV01000052
1.6 KB
0 CDS

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whole genome shotgun sequence
NZ_AAYV01000053
1.4 KB
1 CDS

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whole genome shotgun sequence
NZ_AAYV01000054
1.4 KB
0 CDS

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whole genome shotgun sequence
NZ_AAYV01000055
1.2 KB
0 CDS

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whole genome shotgun sequence
NZ_AAYV01000056
1.2 KB
1 CDS

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whole genome shotgun sequence
NZ_AAYV01000057
1.2 KB
0 CDS

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whole genome shotgun sequence
NZ_AAYV01000058
1.2 KB
2 CDS

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whole genome shotgun sequence
NZ_AAYV01000059
1.1 KB
2 CDS

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whole genome shotgun sequence
NZ_AAYV01000060
1.1 KB
1 CDS

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whole genome shotgun sequence
NZ_AAYV01000061
1.1 KB
0 CDS

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whole genome shotgun sequence
NZ_AAYV01000062
1.1 KB
0 CDS

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whole genome shotgun sequence
NZ_AAYV01000063
1.0 KB
1 CDS

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whole genome shotgun sequence
NZ_AAYV01000064
1023 bytes
0 CDS

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whole genome shotgun sequence
NZ_AAYV01000065
1015 bytes
1 CDS

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whole genome shotgun sequence
NZ_AAYV01000066
1007 bytes
1 CDS

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whole genome shotgun sequence
NZ_AAYV01000067
973 bytes
2 CDS

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whole genome shotgun sequence
NZ_AAYV01000068
969 bytes
1 CDS

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whole genome shotgun sequence
NZ_AAYV01000069
963 bytes
0 CDS

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whole genome shotgun sequence
NZ_AAYV01000070
963 bytes
0 CDS

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whole genome shotgun sequence
NZ_AAYV01000071
952 bytes
1 CDS

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whole genome shotgun sequence
NZ_AAYV01000072
913 bytes
1 CDS

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whole genome shotgun sequence
NZ_AAYV01000073
857 bytes
1 CDS

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whole genome shotgun sequence
NZ_AAYV01000074
821 bytes
1 CDS

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whole genome shotgun sequence
NZ_AAYV01000075
701 bytes
1 CDS

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References

Draft genome sequences of Yersinia pestis isolates from natural foci of endemic plague in China
Eppinger,M., Guo,Z., Sebastian,Y., Song,Y., Lindler,L.E., Yang,R. and Ravel,J. J. Bacteriol. 191 (24), 7628-7629 (2009)
PubMed, PubGet, HubMed

Taxonomy

External Links

Yersinia pestis biovar Antiqua str. E1979001

Search Genome

Sequences

References

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