Yersinia pestis biovar Mediaevalis str. K1973002

TIGR

GC Content: 47.6%, Released Date: March 26, 2007 #18567

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

sequence, whole genome shotgun sequence
NZ_AAYT01000001
825.2 KB
769 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000002
580.2 KB
535 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000003
452.6 KB
426 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000004
284.4 KB
260 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000005
229.1 KB
161 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000006
222.0 KB
199 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000007
199.1 KB
178 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000008
140.2 KB
145 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000009
138.2 KB
143 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000010
127.4 KB
106 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000011
127.3 KB
118 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000012
106.2 KB
92 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000013
100.9 KB
98 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000014
82.7 KB
66 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000015
79.6 KB
63 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000016
78.4 KB
61 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000017
66.2 KB
49 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000018
62.3 KB
59 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000019
51.2 KB
38 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000020
50.5 KB
47 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000021
47.3 KB
37 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000022
44.3 KB
37 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000023
41.8 KB
35 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000024
41.3 KB
34 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000025
41.0 KB
47 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000026
40.6 KB
25 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000027
40.1 KB
35 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000028
37.7 KB
29 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000029
36.1 KB
33 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000030
30.1 KB
28 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000031
27.3 KB
21 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000032
22.7 KB
18 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000033
21.1 KB
25 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000034
18.4 KB
26 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000035
13.4 KB
16 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000036
11.8 KB
10 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000037
9.3 KB
8 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000038
8.6 KB
6 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000039
7.2 KB
12 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000040
6.7 KB
4 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000041
6.2 KB
8 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000042
6.1 KB
4 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000043
3.2 KB
0 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000044
2.9 KB
2 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000045
2.4 KB
1 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000046
2.2 KB
1 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000047
2.0 KB
1 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000048
2.0 KB
2 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000049
1.9 KB
0 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000050
1.8 KB
0 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000051
1.8 KB
1 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000052
1.8 KB
0 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000053
1.7 KB
2 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000054
1.7 KB
0 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000055
1.7 KB
2 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000056
1.6 KB
3 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000057
1.5 KB
0 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000058
1.4 KB
2 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000059
1.4 KB
1 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000060
1.3 KB
1 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000061
1.3 KB
0 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000062
1.2 KB
2 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000063
1.2 KB
0 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000064
1.2 KB
2 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000065
1.0 KB
1 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000066
986 bytes
1 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000067
934 bytes
1 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000068
926 bytes
1 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000069
892 bytes
2 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000070
855 bytes
0 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000071
812 bytes
0 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000072
805 bytes
1 CDS

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sequence, whole genome shotgun sequence
NZ_AAYT01000073
693 bytes
0 CDS

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References

Draft genome sequences of Yersinia pestis isolates from natural foci of endemic plague in China
Eppinger,M., Guo,Z., Sebastian,Y., Song,Y., Lindler,L.E., Yang,R. and Ravel,J. J. Bacteriol. 191 (24), 7628-7629 (2009)
PubMed, PubGet, HubMed

Taxonomy

External Links

Yersinia pestis biovar Mediaevalis str. K1973002

Search Genome

Sequences

References

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