Yersinia pestis biovar Orientalis str. IP275

TIGR

Genome Size: 0.18 megabases, GC Content: 48.1%, Released Date: March 1, 2006 #18569

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_AAOS02000001
302.4 KB
268 CDS

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whole genome shotgun sequence
NZ_AAOS02000002
269.7 KB
261 CDS

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whole genome shotgun sequence
NZ_AAOS02000003
262.3 KB
235 CDS

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whole genome shotgun sequence
NZ_AAOS02000004
249.7 KB
230 CDS

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whole genome shotgun sequence
NZ_AAOS02000005
226.4 KB
175 CDS

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whole genome shotgun sequence
NZ_AAOS02000006
224.3 KB
202 CDS

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whole genome shotgun sequence
NZ_AAOS02000007
214.2 KB
185 CDS

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whole genome shotgun sequence
NZ_AAOS02000008
197.3 KB
182 CDS

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whole genome shotgun sequence
NZ_AAOS02000009
195.7 KB
171 CDS

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whole genome shotgun sequence
NZ_AAOS02000010
193.9 KB
165 CDS

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whole genome shotgun sequence
NZ_AAOS02000011
192.3 KB
222 CDS

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whole genome shotgun sequence
NZ_AAOS02000012
151.0 KB
138 CDS

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whole genome shotgun sequence
NZ_AAOS02000013
149.3 KB
143 CDS

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whole genome shotgun sequence
NZ_AAOS02000014
143.6 KB
118 CDS

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whole genome shotgun sequence
NZ_AAOS02000015
132.8 KB
121 CDS

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whole genome shotgun sequence
NZ_AAOS02000016
132.6 KB
137 CDS

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whole genome shotgun sequence
NZ_AAOS02000017
118.8 KB
112 CDS

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whole genome shotgun sequence
NZ_AAOS02000018
118.1 KB
102 CDS

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whole genome shotgun sequence
NZ_AAOS02000019
113.1 KB
87 CDS

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whole genome shotgun sequence
NZ_AAOS02000020
98.6 KB
94 CDS

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whole genome shotgun sequence
NZ_AAOS02000021
82.5 KB
77 CDS

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whole genome shotgun sequence
NZ_AAOS02000022
82.1 KB
47 CDS

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whole genome shotgun sequence
NZ_AAOS02000023
79.4 KB
84 CDS

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whole genome shotgun sequence
NZ_AAOS02000024
75.0 KB
67 CDS

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whole genome shotgun sequence
NZ_AAOS02000025
71.5 KB
70 CDS

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whole genome shotgun sequence
NZ_AAOS02000026
69.3 KB
61 CDS

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whole genome shotgun sequence
NZ_AAOS02000027
68.7 KB
56 CDS

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whole genome shotgun sequence
NZ_AAOS02000028
60.5 KB
49 CDS

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whole genome shotgun sequence
NZ_AAOS02000029
59.5 KB
51 CDS

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whole genome shotgun sequence
NZ_AAOS02000030
55.9 KB
40 CDS

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whole genome shotgun sequence
NZ_AAOS02000031
51.0 KB
50 CDS

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whole genome shotgun sequence
NZ_AAOS02000032
48.5 KB
40 CDS

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whole genome shotgun sequence
NZ_AAOS02000033
45.1 KB
50 CDS

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whole genome shotgun sequence
NZ_AAOS02000034
44.0 KB
41 CDS

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whole genome shotgun sequence
NZ_AAOS02000035
41.1 KB
43 CDS

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whole genome shotgun sequence
NZ_AAOS02000036
40.4 KB
18 CDS

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whole genome shotgun sequence
NZ_AAOS02000037
37.2 KB
47 CDS

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whole genome shotgun sequence
NZ_AAOS02000038
37.1 KB
38 CDS

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whole genome shotgun sequence
NZ_AAOS02000039
32.5 KB
37 CDS

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whole genome shotgun sequence
NZ_AAOS02000040
26.8 KB
26 CDS

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whole genome shotgun sequence
NZ_AAOS02000041
24.1 KB
21 CDS

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whole genome shotgun sequence
NZ_AAOS02000042
21.7 KB
18 CDS

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whole genome shotgun sequence
NZ_AAOS02000043
20.4 KB
24 CDS

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whole genome shotgun sequence
NZ_AAOS02000044
13.7 KB
14 CDS

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whole genome shotgun sequence
NZ_AAOS02000045
12.4 KB
14 CDS

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whole genome shotgun sequence
NZ_AAOS02000046
12.1 KB
11 CDS

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whole genome shotgun sequence
NZ_AAOS02000047
9.4 KB
6 CDS

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whole genome shotgun sequence
NZ_AAOS02000048
7.4 KB
0 CDS

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whole genome shotgun sequence
NZ_AAOS02000049
7.0 KB
8 CDS

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whole genome shotgun sequence
NZ_AAOS02000050
6.9 KB
13 CDS

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whole genome shotgun sequence
NZ_AAOS02000051
6.3 KB
6 CDS

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whole genome shotgun sequence
NZ_AAOS02000052
6.3 KB
6 CDS

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whole genome shotgun sequence
NZ_AAOS02000053
6.2 KB
3 CDS

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whole genome shotgun sequence
NZ_AAOS02000054
5.1 KB
0 CDS

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whole genome shotgun sequence
NZ_AAOS02000055
3.5 KB
6 CDS

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whole genome shotgun sequence
NZ_AAOS02000056
3.2 KB
3 CDS

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whole genome shotgun sequence
NZ_AAOS02000057
3.1 KB
0 CDS

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whole genome shotgun sequence
NZ_AAOS02000058
2.8 KB
4 CDS

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whole genome shotgun sequence
NZ_AAOS02000059
2.5 KB
2 CDS

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whole genome shotgun sequence
NZ_AAOS02000060
2.3 KB
4 CDS

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whole genome shotgun sequence
NZ_AAOS02000061
2.1 KB
2 CDS

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whole genome shotgun sequence
NZ_AAOS02000062
2.0 KB
2 CDS

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whole genome shotgun sequence
NZ_AAOS02000063
1.9 KB
0 CDS

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whole genome shotgun sequence
NZ_AAOS02000064
1.8 KB
5 CDS

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whole genome shotgun sequence
NZ_AAOS02000065
1.8 KB
2 CDS

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whole genome shotgun sequence
NZ_AAOS02000066
1.7 KB
4 CDS

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whole genome shotgun sequence
NZ_AAOS02000067
1.7 KB
1 CDS

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whole genome shotgun sequence
NZ_AAOS02000068
1.6 KB
2 CDS

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whole genome shotgun sequence
NZ_AAOS02000069
1.5 KB
2 CDS

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whole genome shotgun sequence
NZ_AAOS02000070
1.4 KB
5 CDS

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whole genome shotgun sequence
NZ_AAOS02000071
1.3 KB
0 CDS

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whole genome shotgun sequence
NZ_AAOS02000072
1.3 KB
0 CDS

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whole genome shotgun sequence
NZ_AAOS02000073
1.2 KB
0 CDS

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whole genome shotgun sequence
NZ_AAOS02000074
1.2 KB
0 CDS

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whole genome shotgun sequence
NZ_AAOS02000075
1.1 KB
1 CDS

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whole genome shotgun sequence
NZ_AAOS02000076
1.1 KB
2 CDS

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whole genome shotgun sequence
NZ_AAOS02000077
1.1 KB
2 CDS

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whole genome shotgun sequence
NZ_AAOS02000078
1.1 KB
0 CDS

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whole genome shotgun sequence
NZ_AAOS02000079
1.0 KB
0 CDS

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whole genome shotgun sequence
NZ_AAOS02000080
1.0 KB
0 CDS

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whole genome shotgun sequence
NZ_AAOS02000081
1023 bytes
1 CDS

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whole genome shotgun sequence
NZ_AAOS02000082
1018 bytes
0 CDS

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whole genome shotgun sequence
NZ_AAOS02000083
1014 bytes
0 CDS

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whole genome shotgun sequence
NZ_AAOS02000084
1012 bytes
1 CDS

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whole genome shotgun sequence
NZ_AAOS02000085
1006 bytes
1 CDS

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whole genome shotgun sequence
NZ_AAOS02000086
998 bytes
0 CDS

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whole genome shotgun sequence
NZ_AAOS02000087
985 bytes
2 CDS

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whole genome shotgun sequence
NZ_AAOS02000088
965 bytes
2 CDS

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whole genome shotgun sequence
NZ_AAOS02000089
960 bytes
1 CDS

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whole genome shotgun sequence
NZ_AAOS02000090
959 bytes
0 CDS

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whole genome shotgun sequence
NZ_AAOS02000091
952 bytes
1 CDS

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whole genome shotgun sequence
NZ_AAOS02000092
935 bytes
0 CDS

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whole genome shotgun sequence
NZ_AAOS02000093
929 bytes
0 CDS

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whole genome shotgun sequence
NZ_AAOS02000094
920 bytes
0 CDS

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whole genome shotgun sequence
NZ_AAOS02000095
899 bytes
1 CDS

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whole genome shotgun sequence
NZ_AAOS02000096
891 bytes
0 CDS

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whole genome shotgun sequence
NZ_AAOS02000097
842 bytes
0 CDS

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whole genome shotgun sequence
NZ_AAOS02000098
840 bytes
0 CDS

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whole genome shotgun sequence
NZ_AAOS02000099
809 bytes
1 CDS

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whole genome shotgun sequence
NZ_AAOS02000100
792 bytes
2 CDS

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whole genome shotgun sequence
NZ_AAOS02000101
768 bytes
0 CDS

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Taxonomy

External Links

Yersinia pestis biovar Orientalis str. IP275

Search Genome

Sequences

PubMed Search for Yersinia pestis biovar Orientalis str. IP275

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