Yersinia pestis CO92

Welcome Trust Sanger Institute

Genome Size: 4.88 megabases, GC Content: 47.6%, Released Date: Oct. 5, 2001 #17642

 Completed genome

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region:   bp. upstream of a gene 
Leave blank for no restriction.

Report matches:  in any location within intergenic regions only overlapping genes only  

Allow  1 2 3 4 5 6 7 8 9  mismatched bases 

Sequences

References

• Annotation and evolutionary relationships of a small regulatory RNA gene micF and its target ompF in Yersinia species
  Delihas,N. BMC Microbiol. 3, 13 (2003)
  PubMed, PubGet, HubMed
• Genome sequence of Yersinia pestis, the causative agent of plague
  Parkhill,J., Wren,B.W., Thomson,N.R., Titball,R.W., Holden,M.T., Prentice,M.B., Sebaihia,M., James,K.D., Churcher,C., Mungall,K.L., Baker,S., Basham,D., Bentley,S.D., Brooks,K., Cerdeno-Tarraga,A.M., Chillingworth,T., Cronin,A., Davies,R.M., Davis,P., Dougan,G., Feltwell,T., Hamlin,N., Holroyd,S., Jagels,K., Karlyshev,A.V., Leather,S., Moule,S., Oyston,P.C., Quail,M., Rutherford,K., Simmonds,M., Skelton,J., Stevens,K., Whitehead,S. and Barrell,B.G. Nature 413 (6855), 523-527 (2001)
  PubMed, PubGet, HubMed

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