Yersinia pestis D182038

State Key Laboratory for Infectious Disease Prevention and Control, Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention

Genome Size: 4.78 megabases, Released Date: Nov. 4, 2009 #17675

Completed genome

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
CP001589
4.4 MB
3630 CDS

Table view
Circular View
Artemis Viewer

plasmid pCD1
CP001590
68.0 KB
68 CDS

Table view
Circular View
Artemis Viewer

plasmid pMT1
CP001591
93.8 KB
80 CDS

Table view
Circular View
Artemis Viewer

plasmid pPCP1
CP001592
9.4 KB
9 CDS

Table view
Circular View
Artemis Viewer

References

Spatial variation of Yersinia pestis from Yunnan Province of China
Zhang,Z., Hai,R., Song,Z., Xia,L., Liang,Y., Cai,H., Liang,Y., Shen,X., Zhang,E., Xu,J., Yu,D. and Yu,X.J. Am. J. Trop. Med. Hyg. 81 (4), 714-717 (2009)
PubMed, PubGet, HubMed

Taxonomy

External Links

Yersinia pestis D182038

Search Genome

Sequences

References

Related Genomes