Yersinia pestis KIM 10

Univ. Wisconsin , University of Wisconsin, Genetics, USA, Madison

Genome Size: 4.7 megabases, GC Content: 47.7%, Released Date: July 27, 2002 #17643

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

Yersinia pestis KIM, complete genome
NC_004088
4.4 MB
4050 CDS

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Yersinia pestis KIM plasmid pMT-1
NC_004838
98.6 KB
116 CDS

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Circular View
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References

Genome Sequence of Yersinia pestis KIM
Deng,W., Burland,V., Plunkett,G. III, Boutin,A., Mayhew,G.F., Liss,P., Perna,N.T., Rose,D.J., Mau,B., Zhou,S., Schwartz,D.C., Fetherston,J.D., Lindler,L.E., Brubaker,R.R., Plana,G.V., Straley,S.C., McDonough,K.A., Nilles,M.L., Matson,J.S., Blattner,F.R. and Perry,R.D. J. Bacteriol. 184 (16), 4601-4611 (2002)
PubMed, PubGet, HubMed

Taxonomy

External Links

Yersinia pestis KIM 10

Search Genome

Sequences

References

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