Yersinia pestis Nepal516

ERIC

GC Content: 47.6%, Released Date: May 8, 2009 #18562

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ACNQ01000001
159.9 KB
157 CDS

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whole genome shotgun sequence
NZ_ACNQ01000002
2.1 KB
0 CDS

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whole genome shotgun sequence
NZ_ACNQ01000003
6.7 KB
4 CDS

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whole genome shotgun sequence
NZ_ACNQ01000004
31.8 KB
29 CDS

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whole genome shotgun sequence
NZ_ACNQ01000005
10.2 KB
8 CDS

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whole genome shotgun sequence
NZ_ACNQ01000006
452.2 KB
439 CDS

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whole genome shotgun sequence
NZ_ACNQ01000007
179.6 KB
180 CDS

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whole genome shotgun sequence
NZ_ACNQ01000008
606.4 KB
617 CDS

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whole genome shotgun sequence
NZ_ACNQ01000009
412.3 KB
421 CDS

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whole genome shotgun sequence
NZ_ACNQ01000010
140.6 KB
144 CDS

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whole genome shotgun sequence
NZ_ACNQ01000011
154.3 KB
147 CDS

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whole genome shotgun sequence
NZ_ACNQ01000012
5.3 KB
7 CDS

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whole genome shotgun sequence
NZ_ACNQ01000013
389.3 KB
437 CDS

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whole genome shotgun sequence
NZ_ACNQ01000014
113.1 KB
99 CDS

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whole genome shotgun sequence
NZ_ACNQ01000015
28.0 KB
29 CDS

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whole genome shotgun sequence
NZ_ACNQ01000016
6.3 KB
7 CDS

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whole genome shotgun sequence
NZ_ACNQ01000017
1015.4 KB
970 CDS

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whole genome shotgun sequence
NZ_ACNQ01000018
1.7 KB
2 CDS

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whole genome shotgun sequence
NZ_ACNQ01000019
693.8 KB
684 CDS

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whole genome shotgun sequence
NZ_ACNQ01000020
98.8 KB
120 CDS

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whole genome shotgun sequence
NZ_ACNQ01000021
2.1 KB
3 CDS

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whole genome shotgun sequence
NZ_ACNQ01000022
8.0 KB
9 CDS

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whole genome shotgun sequence
NZ_ACNQ01000023
2.4 KB
4 CDS

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Taxonomy

External Links

Yersinia pestis Nepal516

Search Genome

Sequences

PubMed Search for Yersinia pestis Nepal516

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