Yersinia pestis Nepal516

DOE Joint Genome Institute

Genome Size: 4.61 megabases, GC Content: 47.6%, Released Date: June 9, 2006 #17644

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

complete genome
NC_008149
4.3 MB
3981 CDS

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plasmid pMT
NC_008118
98.6 KB
104 CDS

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plasmid pPCP
NC_008119
10.5 KB
9 CDS

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References

Complete genome sequence of Yersinia pestis strains Antiqua and Nepal516: evidence of gene reduction in an emerging pathogen
Chain,P.S., Hu,P., Malfatti,S.A., Radnedge,L., Larimer,F., Vergez,L.M., Worsham,P., Chu,M.C. and Andersen,G.L. J. Bacteriol. 188 (12), 4453-4463 (2006)
PubMed, PubGet, HubMed

Taxonomy

External Links

Yersinia pestis Nepal516

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Sequences

References

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