Yersinia pestis Z176003

State Key Laboratory for Infectious Disease Prevention and Control, Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention

Genome Size: 4.7716 megabases, GC Content: 47.7%, Released Date: April 8, 2010 #20089

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
CP001593
4.3 MB
3542 CDS

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plasmid pCD1
CP001594
66.7 KB
67 CDS

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plasmid pMT1
CP001595
92.0 KB
76 CDS

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plasmid pPCP1
CP001596
9.4 KB
8 CDS

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References

Complete genome sequences of Yersinia pestis from natural foci in China
Shen,X., Wang,Q., Xia,L., Zhu,X., Zhang,Z., Liang,Y., Cai,H., Zhang,E., Wei,J., Chen,C., Song,Z., Zhang,H., Yu,D. and Hai,R. J. Bacteriol. 192 (13), 3551-3552 (2010)
PubMed, PubGet, HubMed

Taxonomy

External Links

Yersinia pestis Z176003

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Sequences

References

Related Genomes