Clostridiales
- Acetivibrio cellulolyticus CD2 (incomplete)
- Alkaliphilus metalliredigens QYMF (complete)
- Alkaliphilus oremlandii OhILAs (complete)
- Anaerococcus hydrogenalis DSM 7454 (incomplete)
- Anaerococcus lactolyticus ATCC 51172 (incomplete)
- Anaerococcus prevotii DSM 20548 (complete)
- Anaerococcus tetradius ATCC 35098 (incomplete)
- Anaerococcus vaginalis ATCC 51170 (incomplete)
- Anaerofustis stercorihominis DSM 17244 (incomplete)
- Anaerostipes caccae DSM 14662 (incomplete)
- Anaerostipes sp. 3_2_56FAA (incomplete)
- Anaerotruncus colihominis DSM 17241 (incomplete)
- Blautia hansenii DSM 20583 (incomplete)
- Blautia hydrogenotrophica DSM 10507 (incomplete)
- Bryantella formatexigens DSM 14469 (incomplete)
- Butyrivibrio crossotus DSM 2876 (incomplete)
- Butyrivibrio fibrisolvens (complete)
- Butyrivibrio proteoclasticus B316 (complete)
- Candidatus Desulforudis audaxviator MP104C (complete)
- Catonella morbi ATCC 51271 (incomplete)
- Clostridiales bacterium 1_7_47FAA (incomplete)
- Clostridiales genomosp. BVAB3 str. UPII9-5 (complete)
- Clostridium acetobutylicum ATCC 824 (complete)
- Clostridium asparagiforme DSM 15981 (incomplete)
- Clostridium bartlettii DSM 16795 (incomplete)
- Clostridium beijerinckii NCIMB 8052 (complete)
- Clostridium bolteae ATCC BAA-613 (incomplete)
- Clostridium botulinum A str. ATCC 19397 (complete)
- Clostridium botulinum A str. ATCC 3502 (complete)
- Clostridium botulinum A str. Hall (complete)
- Clostridium botulinum A2 str. Kyoto (complete)
- Clostridium botulinum A3 str. Loch Maree (complete)
- Clostridium botulinum B str. Eklund 17B (complete)
- Clostridium botulinum B1 str. Okra (complete)
- Clostridium botulinum Ba4 str. 657 (complete)
- Clostridium botulinum Bf (incomplete)
- Clostridium botulinum C str. Eklund (incomplete)
- Clostridium botulinum D str. 1873 (incomplete)
- Clostridium botulinum E1 str. 'BoNT E Beluga' (incomplete)
- Clostridium botulinum E3 str. Alaska E43 (complete)
- Clostridium botulinum F str. 230613 (complete)
- Clostridium botulinum F str. Langeland (complete)
- Clostridium botulinum NCTC 2916 (incomplete)
- Clostridium butyricum 5521 (incomplete)
- Clostridium butyricum E4 str. BoNT E BL5262 (incomplete)
- Clostridium carboxidivorans P7 (incomplete)
- Clostridium carboxidivorans P7 (incomplete)
- Clostridium cellulolyticum H10 (complete)
- Clostridium cellulovorans 743B (complete)
- Clostridium cellulovorans 743B (incomplete)
- Clostridium cf. saccharolyticum K10 (complete)
- Clostridium difficile 2007855 (incomplete)
- Clostridium difficile 630 (complete)
- Clostridium difficile 6407 (incomplete)
- Clostridium difficile 6466 (incomplete)
- Clostridium difficile 6503 (incomplete)
- Clostridium difficile 6534 (incomplete)
- Clostridium difficile ATCC 43255 (incomplete)
- Clostridium difficile BI1 (incomplete)
- Clostridium difficile CD196 (complete)
- Clostridium difficile CF5 (incomplete)
- Clostridium difficile CIP 107932 (incomplete)
- Clostridium difficile M120 (incomplete)
- Clostridium difficile M68 (incomplete)
- Clostridium difficile NAP07 (incomplete)
- Clostridium difficile NAP08 (incomplete)
- Clostridium difficile QCD-23m63 (incomplete)
- Clostridium difficile QCD-32g58 (incomplete)
- Clostridium difficile QCD-37x79 (incomplete)
- Clostridium difficile QCD-63q42 (incomplete)
- Clostridium difficile QCD-66c26 (incomplete)
- Clostridium difficile QCD-76w55 (incomplete)
- Clostridium difficile QCD-97b34 (incomplete)
- Clostridium difficile R20291 (complete)
- Clostridium hathewayi DSM 13479 (incomplete)
- Clostridium hiranonis DSM 13275 (incomplete)
- Clostridium hylemonae DSM 15053 (incomplete)
- Clostridium kluyveri DSM 555 (complete)
- Clostridium kluyveri NBRC 12016 (complete)
- Clostridium lentocellum DSM 5427 (incomplete)
- Clostridium leptum DSM 753 (incomplete)
- Clostridium ljungdahlii DSM 13528 (complete)
- Clostridium methylpentosum DSM 5476 (incomplete)
- Clostridium nexile DSM 1787 (incomplete)
- Clostridium novyi NT (complete)
- Clostridium papyrosolvens DSM 2782 (incomplete)
- Clostridium perfringens ATCC 13124 (complete)
- Clostridium perfringens B str. ATCC 3626 (incomplete)
- Clostridium perfringens C str. JGS1495 (incomplete)
- Clostridium perfringens CPE str. F4969 (incomplete)
- Clostridium perfringens D str. JGS1721 (incomplete)
- Clostridium perfringens E str. JGS1987 (incomplete)
- Clostridium perfringens NCTC 8239 (incomplete)
- Clostridium perfringens SM101 (complete)
- Clostridium perfringens str. 13 (complete)
- Clostridium phytofermentans ISDg (complete)
- Clostridium saccharolyticum WM1 (complete)
- Clostridium scindens ATCC 35704 (incomplete)
- Clostridium sp. 7_2_43FAA (incomplete)
- Clostridium sp. HGF2 (incomplete)
- Clostridium sp. L2-50 (incomplete)
- Clostridium sp. M62/1 (incomplete)
- Clostridium sp. SS2/1 (incomplete)
- Clostridium sporogenes ATCC 15579 (incomplete)
- Clostridium sticklandii DSM 519 (complete)
- Clostridium tetani E88 (complete)
- Clostridium thermocellum ATCC 27405 (complete)
- Clostridium thermocellum DSM 1313 (complete)
- Clostridium thermocellum DSM 2360 (incomplete)
- Clostridium thermocellum JW20 (incomplete)
- Coprococcus catus GD/7 (complete)
- Coprococcus comes ATCC 27758 (incomplete)
- Coprococcus eutactus ATCC 27759 (incomplete)
- Coprococcus sp. ART55/1 (complete)
- Desulfitobacterium hafniense DCB-2 (complete)
- Desulfitobacterium hafniense Y51 (complete)
- Desulfotomaculum acetoxidans DSM 771 (complete)
- Desulfotomaculum reducens MI-1 (complete)
- Dethiobacter alkaliphilus AHT 1 (incomplete)
- Dorea formicigenerans ATCC 27755 (incomplete)
- Dorea longicatena DSM 13814 (incomplete)
- Epulopiscium sp. 'N.t. morphotype B' (incomplete)
- Ethanoligenens harbinense YUAN-3 (complete)
- Eubacterium cellulosolvens 6 (incomplete)
- Eubacterium eligens ATCC 27750 (complete)
- Eubacterium hallii DSM 3353 (incomplete)
- Eubacterium limosum KIST612 (complete)
- Eubacterium rectale ATCC 33656 (complete)
- Eubacterium rectale DSM 17629 (complete)
- Eubacterium rectale M104/1 (complete)
- Eubacterium saburreum DSM 3986 (incomplete)
- Eubacterium saphenum ATCC 49989 (incomplete)
- Eubacterium siraeum (complete)
- Eubacterium siraeum DSM 15702 (incomplete)
- Eubacterium siraeum V10Sc8a (complete)
- Eubacterium ventriosum ATCC 27560 (incomplete)
- Eubacterium yurii subsp. margaretiae ATCC 43715 (incomplete)
- Faecalibacterium cf. prausnitzii KLE1255 (incomplete)
- Faecalibacterium prausnitzii (complete)
- Faecalibacterium prausnitzii A2-165 (incomplete)
- Faecalibacterium prausnitzii L2-6 (complete)
- Faecalibacterium prausnitzii M21/2 (incomplete)
- Filifactor alocis ATCC 35896 (incomplete)
- Finegoldia magna ACS-171-V-Col3 (incomplete)
- Finegoldia magna ATCC 29328 (complete)
- Finegoldia magna ATCC 53516 (incomplete)
- Finegoldia magna BVS033A4 (incomplete)
- Heliobacterium modesticaldum Ice1 (complete)
- Lachnospiraceae bacterium 5_1_63FAA (incomplete)
- Lachnospiraceae bacterium 8_1_57FAA (incomplete)
- Oribacterium sinus F0268 (incomplete)
- Oribacterium sp. oral taxon 078 str. F0262 (incomplete)
- Parvimonas micra ATCC 33270 (incomplete)
- Pelotomaculum thermopropionicum SI (complete)
- Peptoniphilus duerdenii ATCC BAA-1640 (incomplete)
- Peptoniphilus harei ACS-146-V-Sch2b (incomplete)
- Peptoniphilus lacrimalis 315-B (incomplete)
- Peptoniphilus sp. oral taxon 386 str. F0131 (incomplete)
- Peptoniphilus sp. oral taxon 836 str. F0141 (incomplete)
- Peptostreptococcus anaerobius 653-L (incomplete)
- Peptostreptococcus stomatis DSM 17678 (incomplete)
- Pseudoramibacter alactolyticus ATCC 23263 (incomplete)
- Roseburia intestinalis (complete)
- Roseburia intestinalis L1-82 (incomplete)
- Roseburia intestinalis XB6B4 (complete)
- Roseburia inulinivorans DSM 16841 (incomplete)
- Ruminococcaceae bacterium D16 (incomplete)
- Ruminococcus albus 7 (complete)
- Ruminococcus albus 8 (incomplete)
- Ruminococcus bromii (complete)
- Ruminococcus flavefaciens FD-1 (incomplete)
- Ruminococcus gnavus ATCC 29149 (incomplete)
- Ruminococcus lactaris ATCC 29176 (incomplete)
- Ruminococcus obeum (complete)
- Ruminococcus obeum ATCC 29174 (incomplete)
- Ruminococcus sp. (complete)
- Ruminococcus sp. 18P13 (complete)
- Ruminococcus sp. 5_1_39BFAA (incomplete)
- Ruminococcus torques (complete)
- Ruminococcus torques ATCC 27756 (incomplete)
- Shuttleworthia satelles DSM 14600 (incomplete)
- Subdoligranulum variabile DSM 15176 (incomplete)
- Symbiobacterium thermophilum IAM 14863 (complete)
- Syntrophomonas wolfei subsp. wolfei str. Goettingen (complete)
- Syntrophothermus lipocalidus DSM 12680 (complete)
- Thermaerobacter marianensis DSM 12885 (complete)
- Thermaerobacter subterraneus DSM 13965 (incomplete)
- Thermincola potens JR (complete)
- butyrate-producing bacterium SM4/1 (complete)
- butyrate-producing bacterium SS3/4 (complete)
- butyrate-producing bacterium SSC/2 (complete)